Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2019654..2019808 | Replicon | chromosome |
| Accession | NZ_CP059481 | ||
| Organism | Enterobacter kobei strain IB2020 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2019689..2019792 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2019654..2019808 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1R18_RS10665 | 2016137..2016799 | - | 663 | WP_050861724.1 | exodeoxyribonuclease X | - |
| H1R18_RS10670 | 2016824..2017474 | - | 651 | WP_050861725.1 | carbon-nitrogen hydrolase family protein | - |
| H1R18_RS10675 | 2017585..2017815 | - | 231 | WP_047344678.1 | DNA polymerase III subunit theta | - |
| H1R18_RS10680 | 2017953..2018324 | + | 372 | WP_032636204.1 | CopC domain-containing protein YobA | - |
| H1R18_RS10685 | 2018326..2019195 | + | 870 | WP_023330712.1 | copper homeostasis membrane protein CopD | - |
| H1R18_RS10690 | 2019212..2019550 | + | 339 | WP_014884299.1 | YebY family protein | - |
| - | 2019654..2019808 | - | 155 | - | - | Antitoxin |
| - | 2019689..2019792 | + | 104 | - | - | Toxin |
| H1R18_RS10695 | 2019956..2020897 | - | 942 | WP_023338430.1 | VirK/YbjX family protein | - |
| H1R18_RS10700 | 2021065..2021709 | + | 645 | WP_014884297.1 | protein-serine/threonine phosphatase | - |
| H1R18_RS10705 | 2021744..2021983 | - | 240 | WP_050861726.1 | YebV family protein | - |
| H1R18_RS10710 | 2022090..2023532 | - | 1443 | WP_182115593.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1947685..2028908 | 81223 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T168907 NZ_CP059481:2019689-2019792 [Enterobacter kobei]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 155 bp
>AT168907 NZ_CP059481:c2019808-2019654 [Enterobacter kobei]
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
