Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2859187..2859388 | Replicon | chromosome |
| Accession | NZ_CP059419 | ||
| Organism | Enterobacter hormaechei strain ENCL48880 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2859192..2859295 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2859187..2859388 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H1D58_RS14890 | 2855449..2856897 | + | 1449 | WP_199802692.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H1D58_RS14895 | 2857002..2857241 | + | 240 | WP_006811010.1 | YebV family protein | - |
| H1D58_RS14900 | 2857276..2857920 | - | 645 | WP_155019698.1 | protein-serine/threonine phosphatase | - |
| H1D58_RS14905 | 2858088..2859068 | + | 981 | WP_163346739.1 | VirK/YbjX family protein | - |
| H1D58_RS14910 | 2859114..2859311 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2859187..2859388 | + | 202 | - | - | Antitoxin |
| - | 2859192..2859295 | - | 104 | - | - | Toxin |
| H1D58_RS14915 | 2859437..2859775 | - | 339 | WP_022648464.1 | YebY family protein | - |
| H1D58_RS14920 | 2859792..2860661 | - | 870 | WP_163346737.1 | copper homeostasis membrane protein CopD | - |
| H1D58_RS14925 | 2860663..2861034 | - | 372 | WP_163346777.1 | CopC domain-containing protein YobA | - |
| H1D58_RS14930 | 2861172..2861402 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| H1D58_RS14935 | 2861514..2862152 | + | 639 | WP_163346735.1 | carbon-nitrogen hydrolase family protein | - |
| H1D58_RS14940 | 2862177..2862839 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T168812 NZ_CP059419:c2859295-2859192 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT168812 NZ_CP059419:2859187-2859388 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
