Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2356102..2356373 Replicon chromosome
Accession NZ_CP058948
Organism Escherichia coli strain SY3626C5

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2356140..2356243 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2356102..2356373 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HZ988_RS11510 2353259..2354698 + 1440 WP_001352260.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
HZ988_RS11515 2354816..2355052 + 237 WP_001295499.1 DUF1480 family protein -
HZ988_RS11520 2355157..2355348 + 192 WP_000457842.1 YebW family protein -
HZ988_RS11525 2355349..2356005 - 657 WP_000812724.1 protein-serine/threonine phosphatase -
- 2356102..2356373 + 272 - - Antitoxin
- 2356140..2356243 - 104 - - Toxin
HZ988_RS11530 2356401..2356742 - 342 WP_000976476.1 YebY family protein -
HZ988_RS11535 2356755..2357627 - 873 WP_000879289.1 copper homeostasis membrane protein CopD -
HZ988_RS11540 2357631..2358005 - 375 WP_000168747.1 CopC domain-containing protein YobA -
HZ988_RS11545 2358144..2358374 + 231 WP_000916763.1 DNA polymerase III subunit theta -
HZ988_RS11550 2358476..2359132 + 657 WP_000011658.1 carbon-nitrogen hydrolase family protein -
HZ988_RS11555 2359156..2359818 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T168004 NZ_CP058948:c2356243-2356140 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT168004 NZ_CP058948:2356102-2356373 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References