Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | paaR-paaA-parE/- |
| Location | 2570991..2571462 | Replicon | chromosome |
| Accession | NZ_CP058846 | ||
| Organism | Shigella flexneri strain STLEFF_35 | ||
Toxin (Protein)
| Gene name | parE_1 | Uniprot ID | A0A0D7C2L1 |
| Locus tag | HZT27_RS12665 | Protein ID | WP_001303511.1 |
| Coordinates | 2571184..2571462 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | paaA | Uniprot ID | Q8XAD5 |
| Locus tag | HZT27_RS12660 | Protein ID | WP_001302048.1 |
| Coordinates | 2570991..2571182 (+) | Length | 64 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZT27_RS12605 (2566188) | 2566188..2566547 | - | 360 | WP_240766961.1 | hypothetical protein | - |
| HZT27_RS12610 (2566544) | 2566544..2566720 | - | 177 | WP_000753060.1 | hypothetical protein | - |
| HZT27_RS12615 (2566713) | 2566713..2566895 | - | 183 | WP_001224672.1 | hypothetical protein | - |
| HZT27_RS12620 (2566989) | 2566989..2567345 | - | 357 | WP_208311420.1 | hypothetical protein | - |
| HZT27_RS12625 (2567347) | 2567347..2567910 | - | 564 | WP_155104913.1 | hypothetical protein | - |
| HZT27_RS12630 (2567876) | 2567876..2568175 | - | 300 | WP_032201977.1 | DUF4406 domain-containing protein | - |
| HZT27_RS12635 (2568172) | 2568172..2568594 | - | 423 | WP_240766962.1 | DUF977 family protein | - |
| HZT27_RS12640 (2568635) | 2568635..2569705 | - | 1071 | WP_240766963.1 | phage replisome organizer | - |
| HZT27_RS12645 (2569777) | 2569777..2570202 | - | 426 | WP_000693883.1 | toxin YdaT family protein | - |
| HZT27_RS12650 (2570199) | 2570199..2570501 | - | 303 | WP_000172735.1 | transcriptional regulator | - |
| HZT27_RS12655 (2570599) | 2570599..2570970 | + | 372 | WP_001169685.1 | hypothetical protein | - |
| HZT27_RS12660 (2570991) | 2570991..2571182 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin |
| HZT27_RS12665 (2571184) | 2571184..2571462 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| HZT27_RS12670 (2571754) | 2571754..2571909 | + | 156 | WP_240766964.1 | DUF1391 family protein | - |
| HZT27_RS24075 (2571911) | 2571911..2572039 | + | 129 | WP_021573425.1 | protein YdfB | - |
| HZT27_RS12675 (2572069) | 2572069..2572287 | + | 219 | WP_033560095.1 | protein YdfC | - |
| HZT27_RS12680 (2572853) | 2572853..2573041 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| HZT27_RS12685 (2573038) | 2573038..2573229 | + | 192 | WP_001083273.1 | lysis protein YdfD | - |
| HZT27_RS12690 (2573322) | 2573322..2575793 | + | 2472 | WP_240766965.1 | exonuclease | - |
| HZT27_RS12695 (2575852) | 2575852..2576055 | + | 204 | WP_000096344.1 | DUF4224 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10661.25 Da Isoelectric Point: 5.5647
>T167698 WP_001303511.1 NZ_CP058846:2571184-2571462 [Shigella flexneri]
MLPVLWLESADTDLDDITSYIARFDIDAAERLWQRLRGCVLPLSEHPYLYPPSDRVPGLREIVAHPNYIILYRVTTSSVE
VVNVIHARRQFP
MLPVLWLESADTDLDDITSYIARFDIDAAERLWQRLRGCVLPLSEHPYLYPPSDRVPGLREIVAHPNYIILYRVTTSSVE
VVNVIHARRQFP
Download Length: 279 bp
>T167698 NZ_CP075345:31714-32028 [Enterobacter kobei]
ATGCATTTAATCTCAATGAAGGCAATTTTGGATGCGGTGATCCAGTTTCCGCAACACAGAGAGGAGCTTCTCTTTCTGGG
GCGAACCATCGAAAAGAGCCATTGCCCGACGCCTGTTGCGCTAAGAAAAATCTTTCCAACGCTAGATAATTTGAAGTATC
TCGATAAGCATTATGTTATTGATATTGCTAACAACAACCTCAGAGTAGTGGCTCTCATATTCTTTGAAAGCCAAAAGTTT
TATGTGCGCCATGTTTTTACTCATAAGGAATATGACCGTTTTACGGAGAAACATCGCACTAAGGGGAAGAAATGA
ATGCATTTAATCTCAATGAAGGCAATTTTGGATGCGGTGATCCAGTTTCCGCAACACAGAGAGGAGCTTCTCTTTCTGGG
GCGAACCATCGAAAAGAGCCATTGCCCGACGCCTGTTGCGCTAAGAAAAATCTTTCCAACGCTAGATAATTTGAAGTATC
TCGATAAGCATTATGTTATTGATATTGCTAACAACAACCTCAGAGTAGTGGCTCTCATATTCTTTGAAAGCCAAAAGTTT
TATGTGCGCCATGTTTTTACTCATAAGGAATATGACCGTTTTACGGAGAAACATCGCACTAAGGGGAAGAAATGA
Antitoxin
Download Length: 64 a.a. Molecular weight: 7463.47 Da Isoelectric Point: 8.6828
>AT167698 WP_001302048.1 NZ_CP058846:2570991-2571182 [Shigella flexneri]
MNRALSPMVSEFETIEQENSYNEWLRAKVATSLADPRPAIPHDEVERRMAERFAKMRKERSKQ
MNRALSPMVSEFETIEQENSYNEWLRAKVATSLADPRPAIPHDEVERRMAERFAKMRKERSKQ
Download Length: 192 bp
>AT167698 NZ_CP075345:32025-32444 [Enterobacter kobei]
ATGATGATCGTAGCTGATGCAATGAAAGCAACGCATGCCCTTGTCGCGGCGGTTCCTTTATTGGGTGAACATCCAAACGA
GAAAGATTACCAGGACGCACTTGAGCTGGTTGAGTATTTACTGATGAACGAACCTGGCAGCCCTTTGCTGGATATCGTAT
GTGCAAGAATTCGTCGTTACGAAGCCAATCGGCCCGAAATTGTCGCCTTACGCCAGGAGATGGAATCTGTCCCAGTGGGC
ATTGCCGTTTTAAGAACCCTTATGGATCAATACAAACTGACTATTTCGGATTTTCAGGATGAAATTGGCAGTAAATCAAT
GGTTTCAAGGGTGTTGAACGGTCAACGTCAGCTGACGTTGAACCATATAAAAAAACTGGCTGCTCGCTTTGGGGTATCGC
CTGCGCTGTTCATTGAATGA
ATGATGATCGTAGCTGATGCAATGAAAGCAACGCATGCCCTTGTCGCGGCGGTTCCTTTATTGGGTGAACATCCAAACGA
GAAAGATTACCAGGACGCACTTGAGCTGGTTGAGTATTTACTGATGAACGAACCTGGCAGCCCTTTGCTGGATATCGTAT
GTGCAAGAATTCGTCGTTACGAAGCCAATCGGCCCGAAATTGTCGCCTTACGCCAGGAGATGGAATCTGTCCCAGTGGGC
ATTGCCGTTTTAAGAACCCTTATGGATCAATACAAACTGACTATTTCGGATTTTCAGGATGAAATTGGCAGTAAATCAAT
GGTTTCAAGGGTGTTGAACGGTCAACGTCAGCTGACGTTGAACCATATAAAAAAACTGGCTGCTCGCTTTGGGGTATCGC
CTGCGCTGTTCATTGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|