Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 434210..434481 | Replicon | chromosome |
| Accession | NZ_CP058725 | ||
| Organism | Escherichia coli strain S171-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 434340..434443 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 434210..434481 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZS87_RS02100 | 430765..431427 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HZS87_RS02105 | 431451..432107 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HZS87_RS02110 | 432209..432439 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HZS87_RS02115 | 432578..432952 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HZS87_RS02120 | 432956..433828 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| HZS87_RS02125 | 433841..434182 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 434210..434481 | - | 272 | - | - | Antitoxin |
| - | 434340..434443 | + | 104 | - | - | Toxin |
| HZS87_RS02130 | 434578..435234 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| HZS87_RS02135 | 435235..435426 | - | 192 | WP_001338167.1 | YebW family protein | - |
| HZS87_RS02140 | 435531..435767 | - | 237 | WP_001338166.1 | YebV family protein | - |
| HZS87_RS02145 | 435885..437324 | - | 1440 | WP_024238487.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T167271 NZ_CP058725:434340-434443 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT167271 NZ_CP058725:c434481-434210 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
