Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3726247..3726518 | Replicon | chromosome |
| Accession | NZ_CP058719 | ||
| Organism | Escherichia coli strain M159-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3726285..3726388 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3726247..3726518 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZS86_RS18065 | 3723404..3724843 | + | 1440 | WP_063091473.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HZS86_RS18070 | 3724961..3725197 | + | 237 | WP_001338166.1 | YebV family protein | - |
| HZS86_RS18075 | 3725302..3725493 | + | 192 | WP_001338167.1 | YebW family protein | - |
| HZS86_RS18080 | 3725494..3726150 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 3726247..3726518 | + | 272 | - | - | Antitoxin |
| - | 3726285..3726388 | - | 104 | - | - | Toxin |
| HZS86_RS18085 | 3726546..3726887 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HZS86_RS18090 | 3726900..3727772 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| HZS86_RS18095 | 3727776..3728150 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HZS86_RS18100 | 3728289..3728519 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HZS86_RS18105 | 3728621..3729277 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HZS86_RS18110 | 3729301..3729963 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T167257 NZ_CP058719:c3726388-3726285 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT167257 NZ_CP058719:3726247-3726518 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAATAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAATAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
