Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1113693..1113836 | Replicon | chromosome |
| Accession | NZ_CP058671 | ||
| Organism | Salmonella enterica strain MS114 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1113731..1113834 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1113693..1113836 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HWV51_RS05330 | 1110117..1110815 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| HWV51_RS05335 | 1110839..1111495 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| HWV51_RS05340 | 1111603..1111833 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| HWV51_RS05345 | 1111971..1112345 | + | 375 | WP_000168398.1 | CopC domain-containing protein YobA | - |
| HWV51_RS05350 | 1112346..1113221 | + | 876 | WP_000979700.1 | copper homeostasis membrane protein CopD | - |
| HWV51_RS05355 | 1113238..1113591 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 1113693..1113836 | - | 144 | - | - | Antitoxin |
| - | 1113731..1113834 | + | 104 | - | - | Toxin |
| HWV51_RS05360 | 1113965..1115044 | - | 1080 | WP_000078708.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| HWV51_RS05365 | 1115025..1115297 | - | 273 | WP_031617245.1 | excisionase | - |
| HWV51_RS05370 | 1115369..1115785 | - | 417 | WP_022630509.1 | hypothetical protein | - |
| HWV51_RS05375 | 1115884..1116063 | - | 180 | WP_000276802.1 | DUF1187 family protein | - |
| HWV51_RS05380 | 1116051..1116677 | - | 627 | WP_000069467.1 | hypothetical protein | - |
| HWV51_RS05385 | 1116674..1117006 | - | 333 | WP_000066251.1 | hypothetical protein | - |
| HWV51_RS05390 | 1116999..1117319 | - | 321 | WP_001033920.1 | hypothetical protein | - |
| HWV51_RS05395 | 1117355..1118449 | - | 1095 | WP_000107768.1 | RecT family recombinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sspH2 / sopE2 | 1091822..1181176 | 89354 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T167111 NZ_CP058671:1113731-1113834 [Salmonella enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT167111 NZ_CP058671:c1113836-1113693 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
