Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 692805..692950 | Replicon | chromosome |
| Accession | NZ_CP058637 | ||
| Organism | Enterobacter roggenkampii strain KQ-01 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 692840..692943 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 692805..692950 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZL08_RS03105 | 689288..689950 | - | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
| HZL08_RS03110 | 689975..690625 | - | 651 | WP_179367168.1 | carbon-nitrogen hydrolase family protein | - |
| HZL08_RS03115 | 690736..690966 | - | 231 | WP_021240433.1 | DNA polymerase III subunit theta | - |
| HZL08_RS03120 | 691104..691475 | + | 372 | WP_021240432.1 | CopC domain-containing protein YobA | - |
| HZL08_RS03125 | 691477..692346 | + | 870 | WP_021240431.1 | copper homeostasis membrane protein CopD | - |
| HZL08_RS03130 | 692363..692701 | + | 339 | WP_008500468.1 | YebY family protein | - |
| - | 692805..692950 | - | 146 | - | - | Antitoxin |
| - | 692840..692943 | + | 104 | - | - | Toxin |
| HZL08_RS03135 | 693356..693847 | + | 492 | WP_179367169.1 | hypothetical protein | - |
| HZL08_RS03140 | 694154..695095 | - | 942 | WP_021240429.1 | VirK/YbjX family protein | - |
| HZL08_RS03145 | 695262..695906 | + | 645 | WP_021240428.1 | protein-serine/threonine phosphatase | - |
| HZL08_RS03150 | 695941..696180 | - | 240 | WP_008500472.1 | YebV family protein | - |
| HZL08_RS03155 | 696287..697729 | - | 1443 | WP_021240427.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T166968 NZ_CP058637:692840-692943 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT166968 NZ_CP058637:c692950-692805 [Enterobacter roggenkampii]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
