Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 720576..721225 Replicon chromosome
Accession NZ_CP058236
Organism Mycobacterium tuberculosis strain 060827

Toxin (Protein)


Gene name vapC Uniprot ID P67241
Locus tag HWS75_RS03305 Protein ID WP_003403236.1
Coordinates 720830..721225 (+) Length 132 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ34
Locus tag HWS75_RS03300 Protein ID WP_003403235.1
Coordinates 720576..720830 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HWS75_RS03275 715701..715784 + 84 Protein_650 galactose-1-phosphate uridylyltransferase -
HWS75_RS03280 715803..716885 + 1083 WP_031652152.1 galactose-1-phosphate uridylyltransferase -
HWS75_RS03285 716882..717973 + 1092 WP_003900977.1 galactokinase -
HWS75_RS03290 718368..719525 + 1158 WP_003903091.1 hypothetical protein -
HWS75_RS03295 719536..720483 + 948 WP_003403232.1 DUF732 domain-containing protein -
HWS75_RS03300 720576..720830 + 255 WP_003403235.1 type II toxin-antitoxin system antitoxin VapB30 Antitoxin
HWS75_RS03305 720830..721225 + 396 WP_003403236.1 type II toxin-antitoxin system toxin ribonuclease C30 Toxin
HWS75_RS03310 721319..722059 - 741 WP_003403239.1 TVP38/TMEM64 family protein -
HWS75_RS03315 722191..722451 + 261 WP_003403244.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
HWS75_RS03320 722448..722855 + 408 WP_003403246.1 type II toxin-antitoxin system VapC family toxin -
HWS75_RS03325 722927..724078 - 1152 WP_003403248.1 FIST N-terminal domain-containing protein -
HWS75_RS03330 724171..725898 - 1728 WP_235733076.1 exodeoxyribonuclease V subunit alpha -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-124)

Antitoxin

Antitoxin VapB-like

(1-83)


Sequences

Toxin        


Download         Length: 132 a.a.        Molecular weight: 14250.04 Da        Isoelectric Point: 4.7475

>T166329 WP_003403236.1 NZ_CP058236:720830-721225 [Mycobacterium tuberculosis]
MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLWLHRAAVDLVAVHADQADAAR
AAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDFQHTDIATVALP

Download         Length: 396 bp

>T166329 NZ_CP074124:14280-14696 [Escherichia coli]
GTGAACAAGACTTATATGCTTGATACCTGTATCTGCTCGTTCATCATGCGTGAACAGCCAGAAGCCGTCCTGAAGCGTCT
GGAGCAGGCGGTGCTACGCGGCCACCGTATAGTGGTCTCGGCCATCACCTACTCTGAAATGCGCTTCGGGGCTACCGGCC
CAAAGGCCTCACCACGTCACGTCCAACTGGTCGATGAATTCTGCGCCCGCCTCGATGCCATCCTGCCCTGGGATCGCGCC
GCAGTAGACGCCACCACGAAGATTAAAGTGGCACTGCGGCTGGCCGGGACGCCGATCGGCCCGAACGACACGGCGATTGC
CGGGCACGCCATCGCCGCCGGGGCGATACTGGTAACGAATAATACAAGAGAATTTGAGCGAGTGCCTGACCTGGTGCTGG
AAGACTGGGTGAAGTAA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9139.52 Da        Isoelectric Point: 9.2702

>AT166329 WP_003403235.1 NZ_CP058236:720576-720830 [Mycobacterium tuberculosis]
MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILGYDER
GLPA

Download         Length: 255 bp

>AT166329 NZ_CP074124:14053-14283 [Escherichia coli]
ATGAGAACCGTATCGATATTCAAAAATGGCAACAACCGCGCCATCCGTCTGCCTCGTGATCTGGATTTTGAGGGGGTGAG
CGAGCTCGAGATCGTCCGGGAAGGGGACAGCATCATCCTGCGCCCCGTCCGGCCAACCTGGGGATCATTCCTAGAGTACG
AAAAAGCCGATCCAGATTTTATGGCGGAGCGCGAGGATGTTGTCAGCGACGAAGGGCGATTTAACCTGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4XGR
PDB 4XGQ

Antitoxin

Source ID Structure
PDB 4XGR
PDB 4XGQ
AlphaFold DB A0A7U4BSC2

References