Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2690441..2690642 | Replicon | chromosome |
| Accession | NZ_CP058160 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00083 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2690446..2690549 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2690441..2690642 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV059_RS12875 | 2686686..2688149 | + | 1464 | WP_047051762.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV059_RS12880 | 2688256..2688495 | + | 240 | WP_006811010.1 | YebV family protein | - |
| HV059_RS12885 | 2688530..2689174 | - | 645 | WP_047051763.1 | protein-serine/threonine phosphatase | - |
| HV059_RS12890 | 2689342..2690322 | + | 981 | WP_048982483.1 | VirK/YbjX family protein | - |
| HV059_RS12895 | 2690368..2690565 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2690441..2690642 | + | 202 | - | - | Antitoxin |
| - | 2690446..2690549 | - | 104 | - | - | Toxin |
| HV059_RS12900 | 2690690..2691028 | - | 339 | WP_003859787.1 | YebY family protein | - |
| HV059_RS12905 | 2691045..2691914 | - | 870 | WP_048982486.1 | copper homeostasis membrane protein CopD | - |
| HV059_RS12910 | 2691916..2692287 | - | 372 | WP_047051768.1 | CopC domain-containing protein YobA | - |
| HV059_RS12915 | 2692425..2692655 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV059_RS12920 | 2692767..2693417 | + | 651 | WP_048982489.1 | carbon-nitrogen hydrolase family protein | - |
| HV059_RS12925 | 2693442..2694104 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165968 NZ_CP058160:c2690549-2690446 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT165968 NZ_CP058160:2690441-2690642 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
