Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1958569..1958770 | Replicon | chromosome |
| Accession | NZ_CP058157 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00086 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1958662..1958765 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1958569..1958770 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV061_RS09315 | 1955118..1955780 | - | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
| HV061_RS09320 | 1955805..1956443 | - | 639 | WP_023300434.1 | carbon-nitrogen hydrolase family protein | - |
| HV061_RS09325 | 1956555..1956785 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV061_RS09330 | 1956923..1957294 | + | 372 | WP_038416261.1 | CopC domain-containing protein YobA | - |
| HV061_RS09335 | 1957296..1958165 | + | 870 | WP_023300432.1 | copper homeostasis membrane protein CopD | - |
| HV061_RS09340 | 1958182..1958520 | + | 339 | WP_022648464.1 | YebY family protein | - |
| - | 1958569..1958770 | - | 202 | - | - | Antitoxin |
| HV061_RS09345 | 1958646..1958843 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 1958662..1958765 | + | 104 | - | - | Toxin |
| HV061_RS09350 | 1958889..1959869 | - | 981 | WP_063199263.1 | VirK/YbjX family protein | - |
| HV061_RS09355 | 1960037..1960681 | + | 645 | WP_063199266.1 | protein-serine/threonine phosphatase | - |
| HV061_RS09360 | 1960716..1960955 | - | 240 | WP_006811010.1 | YebV family protein | - |
| HV061_RS09365 | 1961060..1962523 | - | 1464 | WP_181237609.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165947 NZ_CP058157:1958662-1958765 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT165947 NZ_CP058157:c1958770-1958569 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTAAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTAAAAAACCGC
