Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 97445..98163 | Replicon | chromosome |
| Accession | NZ_CP058157 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00086 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | A0A822WUK4 |
| Locus tag | HV061_RS00505 | Protein ID | WP_071605960.1 |
| Coordinates | 97445..97765 (-) | Length | 107 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | HV061_RS00510 | Protein ID | WP_142667717.1 |
| Coordinates | 97807..98163 (-) | Length | 119 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV061_RS00460 | 93009..93488 | + | 480 | WP_017693981.1 | hypothetical protein | - |
| HV061_RS00465 | 93731..94612 | + | 882 | WP_038415011.1 | helix-turn-helix domain-containing protein | - |
| HV061_RS00470 | 94677..94976 | - | 300 | WP_023299004.1 | XRE family transcriptional regulator | - |
| HV061_RS00475 | 94973..95323 | - | 351 | WP_047050720.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HV061_RS00480 | 95478..95893 | - | 416 | Protein_95 | hydroxyacid dehydrogenase | - |
| HV061_RS00485 | 95944..96285 | - | 342 | WP_063200578.1 | SymE family type I addiction module toxin | - |
| HV061_RS00490 | 96411..96602 | + | 192 | WP_038416963.1 | toxin-antitoxin system HicB family antitoxin | - |
| HV061_RS00495 | 96608..96835 | - | 228 | WP_139153348.1 | hypothetical protein | - |
| HV061_RS00500 | 96881..97234 | - | 354 | WP_063200576.1 | hypothetical protein | - |
| HV061_RS00505 | 97445..97765 | - | 321 | WP_071605960.1 | TA system toxin CbtA family protein | Toxin |
| HV061_RS00510 | 97807..98163 | - | 357 | WP_142667717.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| HV061_RS00515 | 98195..98416 | - | 222 | WP_023315134.1 | DUF987 domain-containing protein | - |
| HV061_RS00520 | 98425..98895 | - | 471 | WP_032294514.1 | DNA repair protein RadC | - |
| HV061_RS00525 | 98965..99786 | - | 822 | WP_126493465.1 | DUF945 domain-containing protein | - |
| HV061_RS00530 | 100032..101179 | + | 1148 | WP_115168574.1 | IS3 family transposase | - |
| HV061_RS00535 | 101200..102174 | + | 975 | WP_148742173.1 | inovirus-type Gp2 protein | - |
| HV061_RS00540 | 102286..102678 | + | 393 | WP_072186456.1 | hypothetical protein | - |
| HV061_RS00545 | 102809..103132 | + | 324 | WP_039274677.1 | metalloregulator ArsR/SmtB family transcription factor | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | rfaD | 94973..181901 | 86928 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 107 a.a. Molecular weight: 12227.83 Da Isoelectric Point: 6.3229
>T165944 WP_071605960.1 NZ_CP058157:c97765-97445 [Enterobacter hormaechei]
MHISTVPKTVTVSSRLSPVQVWQKLLTYILEHHYGLTINDTPFSNDTTIQEHIEAGVNLTDAVNFLVERFELVRIDQKSF
SWQDQEPWITSLDVHRAQSNLGLKRP
MHISTVPKTVTVSSRLSPVQVWQKLLTYILEHHYGLTINDTPFSNDTTIQEHIEAGVNLTDAVNFLVERFELVRIDQKSF
SWQDQEPWITSLDVHRAQSNLGLKRP
Download Length: 321 bp
>T165944 NZ_CP074005:1034292-1034627 [Escherichia coli]
ATGGTAAGCCGATACGTACCCGATATGGGCGATCTGATTTGGGTTGATTTTGACCCGACAAAAGGTAGCGAGCAAGCTGG
ACATCGTCCAGCTGTTGTCCTGAGTCCTTTCATGTACAACAACAAAACAGGTATGTGTCTGTGTGTTCCTTGTACAACGC
AATCAAAAGGATATCCGTTCGAAGTTGTTTTATCCGGTCAGGAACGTGATGGCGTAGCGTTAGCTGATCAGGTAAAAAGT
ATCGCCTGGCGGGCAAGAGGAGCAACGAAGAAAGGAACAGTTGCCCCAGAGGAATTACAACTCATTAAAGCCAAAATTAA
CGTACTGATTGGGTAG
ATGGTAAGCCGATACGTACCCGATATGGGCGATCTGATTTGGGTTGATTTTGACCCGACAAAAGGTAGCGAGCAAGCTGG
ACATCGTCCAGCTGTTGTCCTGAGTCCTTTCATGTACAACAACAAAACAGGTATGTGTCTGTGTGTTCCTTGTACAACGC
AATCAAAAGGATATCCGTTCGAAGTTGTTTTATCCGGTCAGGAACGTGATGGCGTAGCGTTAGCTGATCAGGTAAAAAGT
ATCGCCTGGCGGGCAAGAGGAGCAACGAAGAAAGGAACAGTTGCCCCAGAGGAATTACAACTCATTAAAGCCAAAATTAA
CGTACTGATTGGGTAG
Antitoxin
Download Length: 119 a.a. Molecular weight: 13152.92 Da Isoelectric Point: 6.3130
>AT165944 WP_142667717.1 NZ_CP058157:c98163-97807 [Enterobacter hormaechei]
MQSTTLSGTSAENASCLQWGLKRNITPCFGARLVQEGNRLYFLADRAGFNGLFSDDEALRLGQAFPLMMKQLERMLTTGE
LDPHNQHCVTLHHNGLTCEADTLGSYGYVYIAIYPHQL
MQSTTLSGTSAENASCLQWGLKRNITPCFGARLVQEGNRLYFLADRAGFNGLFSDDEALRLGQAFPLMMKQLERMLTTGE
LDPHNQHCVTLHHNGLTCEADTLGSYGYVYIAIYPHQL
Download Length: 357 bp
>AT165944 NZ_CP074005:1034044-1034292 [Escherichia coli]
ATGATCCACAGTAGCGTAAAGCGTTGGGGAAATTCACCGGCGGTGCGGATCCCGACTACGTTAATGCAGGCGCTCAATCT
GAATATTGATGATGAAGTGAAGATTGACCTGGTGGATGGCAAATTAATTATTGAGCCAGTGCGTAAAGAGCCCGTATTTA
CGCTTGCTGAACTGGTCAACGACATCACGCCGGAAAACCTCCACGAGAATATCGACTGGGGAGAGCCGAAAGATAAGGAA
GTCTGGTAA
ATGATCCACAGTAGCGTAAAGCGTTGGGGAAATTCACCGGCGGTGCGGATCCCGACTACGTTAATGCAGGCGCTCAATCT
GAATATTGATGATGAAGTGAAGATTGACCTGGTGGATGGCAAATTAATTATTGAGCCAGTGCGTAAAGAGCCCGTATTTA
CGCTTGCTGAACTGGTCAACGACATCACGCCGGAAAACCTCCACGAGAATATCGACTGGGGAGAGCCGAAAGATAAGGAA
GTCTGGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|