Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2033822..2033963 | Replicon | chromosome |
| Accession | NZ_CP057864 | ||
| Organism | Citrobacter freundii strain RHB12-C19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2033857..2033960 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2033822..2033963 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVW68_RS09600 | 2030269..2030931 | - | 663 | WP_003841659.1 | exodeoxyribonuclease X | - |
| HVW68_RS09605 | 2030955..2031611 | - | 657 | WP_046671220.1 | carbon-nitrogen hydrolase family protein | - |
| HVW68_RS09610 | 2031718..2031948 | - | 231 | WP_106902137.1 | DNA polymerase III subunit theta | - |
| HVW68_RS09615 | 2032092..2032466 | + | 375 | WP_181826147.1 | CopC domain-containing protein YobA | - |
| HVW68_RS09620 | 2032470..2033342 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| HVW68_RS09625 | 2033363..2033701 | + | 339 | WP_181826148.1 | YebY family protein | - |
| - | 2033822..2033963 | - | 142 | - | - | Antitoxin |
| - | 2033857..2033960 | + | 104 | - | - | Toxin |
| HVW68_RS09630 | 2034093..2035172 | - | 1080 | WP_016150458.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| HVW68_RS09635 | 2035150..2035410 | - | 261 | WP_072211989.1 | hypothetical protein | - |
| HVW68_RS09640 | 2035474..2037945 | - | 2472 | WP_060855113.1 | exonuclease | - |
| HVW68_RS09645 | 2038087..2038413 | - | 327 | WP_060855149.1 | Rrf2 family transcriptional regulator | - |
| HVW68_RS09650 | 2038475..2038687 | - | 213 | WP_153070801.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2026618..2087771 | 61153 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165726 NZ_CP057864:2033857-2033960 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 142 bp
>AT165726 NZ_CP057864:c2033963-2033822 [Citrobacter freundii]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
