Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1910897..1911164 | Replicon | chromosome |
| Accession | NZ_CP057561 | ||
| Organism | Escherichia fergusonii strain RHB23-C02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1911023..1911126 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1910897..1911164 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVX92_RS08980 | 1907447..1908109 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HVX92_RS08985 | 1908133..1908789 | - | 657 | WP_046081494.1 | carbon-nitrogen hydrolase family protein | - |
| HVX92_RS08990 | 1908896..1909126 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVX92_RS08995 | 1909265..1909639 | + | 375 | WP_181812465.1 | CopC domain-containing protein YobA | - |
| HVX92_RS09000 | 1909642..1910514 | + | 873 | WP_000928495.1 | copper homeostasis membrane protein CopD | - |
| HVX92_RS09005 | 1910526..1910867 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 1910897..1911164 | - | 268 | - | - | Antitoxin |
| - | 1911023..1911126 | + | 104 | - | - | Toxin |
| HVX92_RS09010 | 1911260..1911916 | + | 657 | WP_181812466.1 | protein-serine/threonine phosphatase | - |
| HVX92_RS09015 | 1911917..1912108 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HVX92_RS09020 | 1912213..1912449 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HVX92_RS09025 | 1912568..1914007 | - | 1440 | WP_181812467.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165490 NZ_CP057561:1911023-1911126 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 268 bp
>AT165490 NZ_CP057561:c1911164-1910897 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGGGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGGGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
