Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2253913..2254058 | Replicon | chromosome |
| Accession | NZ_CP057330 | ||
| Organism | Klebsiella oxytoca strain RHB30-C02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2253948..2254051 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2253913..2254058 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY70_RS10665 | 2249017..2251077 | + | 2061 | WP_064344540.1 | oligopeptidase B | - |
| HVY70_RS10670 | 2251084..2251743 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| HVY70_RS10675 | 2251822..2252052 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| HVY70_RS10680 | 2252188..2252562 | + | 375 | WP_016808306.1 | CopC domain-containing protein YobA | - |
| HVY70_RS10685 | 2252567..2253436 | + | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| HVY70_RS10690 | 2253453..2253791 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2253913..2254058 | - | 146 | - | - | Antitoxin |
| - | 2253948..2254051 | + | 104 | - | - | Toxin |
| HVY70_RS10695 | 2254165..2255124 | - | 960 | WP_064344539.1 | spore coat U domain-containing protein | - |
| HVY70_RS10700 | 2255136..2257469 | - | 2334 | WP_064344538.1 | fimbrial biogenesis outer membrane usher protein | - |
| HVY70_RS10705 | 2257472..2258236 | - | 765 | WP_064344537.1 | molecular chaperone | - |
| HVY70_RS10710 | 2258254..2258772 | - | 519 | WP_023321220.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165226 NZ_CP057330:2253948-2254051 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT165226 NZ_CP057330:c2254058-2253913 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
