Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1922028..1922263 | Replicon | chromosome |
| Accession | NZ_CP057258 | ||
| Organism | Citrobacter freundii strain RHB31-C16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1922154..1922257 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1922028..1922263 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY90_RS08985 | 1918574..1919236 | - | 663 | WP_096756686.1 | exodeoxyribonuclease X | - |
| HVY90_RS08990 | 1919260..1919916 | - | 657 | WP_153879980.1 | carbon-nitrogen hydrolase family protein | - |
| HVY90_RS08995 | 1920023..1920247 | - | 225 | WP_096756688.1 | DNA polymerase III subunit theta | - |
| HVY90_RS09000 | 1920392..1920766 | + | 375 | WP_135911868.1 | CopC domain-containing protein YobA | - |
| HVY90_RS09005 | 1920771..1921643 | + | 873 | WP_115258190.1 | copper homeostasis membrane protein CopD | - |
| HVY90_RS09010 | 1921660..1921998 | + | 339 | WP_146716933.1 | YebY family protein | - |
| - | 1922028..1922263 | - | 236 | - | - | Antitoxin |
| - | 1922154..1922257 | + | 104 | - | - | Toxin |
| HVY90_RS09015 | 1922412..1923053 | + | 642 | WP_146716932.1 | protein-serine/threonine phosphatase | - |
| HVY90_RS09020 | 1923054..1923245 | - | 192 | WP_045444034.1 | YebW family protein | - |
| HVY90_RS09025 | 1923348..1923584 | - | 237 | WP_161959030.1 | DUF1480 family protein | - |
| HVY90_RS09030 | 1923685..1925106 | - | 1422 | WP_181689008.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165135 NZ_CP057258:1922154-1922257 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 236 bp
>AT165135 NZ_CP057258:c1922263-1922028 [Citrobacter freundii]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGTCCGCGACCAAAGTGG
CCTGAAAAAAAGGACGATTGTCACCCGCTAGAATGCAAAAACCGCAAGTTCTGCAGCCAGAACGTTGCGGTTTTTT
