Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1998087..1998355 | Replicon | chromosome |
| Accession | NZ_CP057243 | ||
| Organism | Escherichia fergusonii strain RHB32-C05 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1998214..1998317 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1998087..1998355 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY96_RS09485 | 1994637..1995299 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| HVY96_RS09490 | 1995323..1995979 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| HVY96_RS09495 | 1996086..1996316 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| HVY96_RS09500 | 1996455..1996829 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| HVY96_RS09505 | 1996832..1997704 | + | 873 | WP_181667362.1 | copper homeostasis membrane protein CopD | - |
| HVY96_RS09510 | 1997716..1998057 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 1998087..1998355 | - | 269 | - | - | Antitoxin |
| - | 1998214..1998317 | + | 104 | - | - | Toxin |
| HVY96_RS09515 | 1998451..1999107 | + | 657 | WP_000812708.1 | protein-serine/threonine phosphatase | - |
| HVY96_RS09520 | 1999108..1999299 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HVY96_RS09525 | 1999404..1999640 | - | 237 | WP_002431586.1 | DUF1480 family protein | - |
| HVY96_RS09530 | 1999759..2001198 | - | 1440 | WP_181591417.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T165072 NZ_CP057243:1998214-1998317 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT165072 NZ_CP057243:c1998355-1998087 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
