Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2767894..2768095 | Replicon | chromosome |
| Accession | NZ_CP056756 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00198 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2767899..2768002 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2767894..2768095 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV117_RS13400 | 2764139..2765602 | + | 1464 | WP_047051762.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV117_RS13405 | 2765709..2765948 | + | 240 | WP_006811010.1 | YebV family protein | - |
| HV117_RS13410 | 2765983..2766627 | - | 645 | WP_047051763.1 | protein-serine/threonine phosphatase | - |
| HV117_RS13415 | 2766795..2767775 | + | 981 | WP_047051764.1 | VirK/YbjX family protein | - |
| HV117_RS13420 | 2767821..2768018 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2767894..2768095 | + | 202 | - | - | Antitoxin |
| - | 2767899..2768002 | - | 104 | - | - | Toxin |
| HV117_RS13425 | 2768143..2768481 | - | 339 | WP_003859787.1 | YebY family protein | - |
| HV117_RS13430 | 2768498..2769367 | - | 870 | WP_048982486.1 | copper homeostasis membrane protein CopD | - |
| HV117_RS13435 | 2769369..2769740 | - | 372 | WP_047051768.1 | CopC domain-containing protein YobA | - |
| HV117_RS13440 | 2769878..2770108 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV117_RS13445 | 2770220..2770870 | + | 651 | WP_048982489.1 | carbon-nitrogen hydrolase family protein | - |
| HV117_RS13450 | 2770895..2771557 | + | 663 | WP_047051600.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164154 NZ_CP056756:c2768002-2767899 [Enterobacter hormaechei]
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT164154 NZ_CP056756:2767894-2768095 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
