Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1977472..1977673 | Replicon | chromosome |
| Accession | NZ_CP056751 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00216 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1977565..1977668 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1977472..1977673 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV128_RS09555 | 1974010..1974672 | - | 663 | WP_047051600.1 | exodeoxyribonuclease X | - |
| HV128_RS09560 | 1974697..1975347 | - | 651 | WP_048982489.1 | carbon-nitrogen hydrolase family protein | - |
| HV128_RS09565 | 1975459..1975689 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV128_RS09570 | 1975827..1976198 | + | 372 | WP_047051768.1 | CopC domain-containing protein YobA | - |
| HV128_RS09575 | 1976200..1977069 | + | 870 | WP_048982486.1 | copper homeostasis membrane protein CopD | - |
| HV128_RS09580 | 1977086..1977424 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 1977472..1977673 | - | 202 | - | - | Antitoxin |
| HV128_RS09585 | 1977549..1977746 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 1977565..1977668 | + | 104 | - | - | Toxin |
| HV128_RS09590 | 1977792..1978772 | - | 981 | WP_047051764.1 | VirK/YbjX family protein | - |
| HV128_RS09595 | 1978940..1979584 | + | 645 | WP_047051763.1 | protein-serine/threonine phosphatase | - |
| HV128_RS09600 | 1979619..1979858 | - | 240 | WP_006811010.1 | YebV family protein | - |
| HV128_RS09605 | 1979965..1981428 | - | 1464 | WP_047051762.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1910913..1994326 | 83413 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T164130 NZ_CP056751:1977565-1977668 [Enterobacter hormaechei]
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT164130 NZ_CP056751:c1977673-1977472 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
