Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2684756..2684957 | Replicon | chromosome |
| Accession | NZ_CP056707 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00564 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2684761..2684864 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2684756..2684957 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV236_RS12845 | 2681001..2682464 | + | 1464 | WP_047051762.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV236_RS12850 | 2682571..2682810 | + | 240 | WP_006811010.1 | YebV family protein | - |
| HV236_RS12855 | 2682845..2683489 | - | 645 | WP_047051763.1 | protein-serine/threonine phosphatase | - |
| HV236_RS12860 | 2683657..2684637 | + | 981 | WP_047051764.1 | VirK/YbjX family protein | - |
| HV236_RS12865 | 2684683..2684880 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2684756..2684957 | + | 202 | - | - | Antitoxin |
| - | 2684761..2684864 | - | 104 | - | - | Toxin |
| HV236_RS12870 | 2685005..2685343 | - | 339 | WP_003859787.1 | YebY family protein | - |
| HV236_RS12875 | 2685360..2686229 | - | 870 | WP_048982486.1 | copper homeostasis membrane protein CopD | - |
| HV236_RS12880 | 2686231..2686602 | - | 372 | WP_047051768.1 | CopC domain-containing protein YobA | - |
| HV236_RS12885 | 2686740..2686970 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV236_RS12890 | 2687082..2687732 | + | 651 | WP_048982489.1 | carbon-nitrogen hydrolase family protein | - |
| HV236_RS12895 | 2687757..2688419 | + | 663 | WP_047051600.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163964 NZ_CP056707:c2684864-2684761 [Enterobacter hormaechei]
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT163964 NZ_CP056707:2684756-2684957 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
