Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2152683..2152851 | Replicon | chromosome |
| Accession | NZ_CP056701 | ||
| Organism | Klebsiella grimontii strain RHBSTW-00577 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2152741..2152844 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2152683..2152851 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV240_RS10360 | 2147810..2149870 | + | 2061 | WP_049085565.1 | oligopeptidase B | - |
| HV240_RS10365 | 2149877..2150536 | - | 660 | WP_004134816.1 | exodeoxyribonuclease X | - |
| HV240_RS10370 | 2150615..2150845 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| HV240_RS10375 | 2150981..2151355 | + | 375 | WP_049085566.1 | CopC domain-containing protein YobA | - |
| HV240_RS10380 | 2151360..2152229 | + | 870 | WP_004134819.1 | copper homeostasis membrane protein CopD | - |
| HV240_RS10385 | 2152246..2152584 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2152683..2152851 | - | 169 | - | - | Antitoxin |
| - | 2152741..2152844 | + | 104 | - | - | Toxin |
| HV240_RS10390 | 2152969..2153928 | - | 960 | WP_049085573.1 | spore coat U domain-containing protein | - |
| HV240_RS10395 | 2153943..2156273 | - | 2331 | WP_082237025.1 | fimbrial biogenesis outer membrane usher protein | - |
| HV240_RS10400 | 2156276..2157040 | - | 765 | WP_004134823.1 | molecular chaperone | - |
| HV240_RS10405 | 2157059..2157577 | - | 519 | WP_032711055.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2147756..2166310 | 18554 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163939 NZ_CP056701:2152741-2152844 [Klebsiella grimontii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT163939 NZ_CP056701:c2152851-2152683 [Klebsiella grimontii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
