Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1921958..1922203 | Replicon | chromosome |
| Accession | NZ_CP056697 | ||
| Organism | Escherichia marmotae strain RHBSTW-00605 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1922086..1922189 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1921958..1922203 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV246_RS08930 | 1918511..1919173 | - | 663 | WP_000944296.1 | exodeoxyribonuclease X | - |
| HV246_RS08935 | 1919198..1919854 | - | 657 | WP_000122137.1 | carbon-nitrogen hydrolase family protein | - |
| HV246_RS08940 | 1919955..1920185 | - | 231 | WP_000916764.1 | DNA polymerase III subunit theta | - |
| HV246_RS08945 | 1920324..1920698 | + | 375 | WP_000168753.1 | CopC domain-containing protein YobA | - |
| HV246_RS08950 | 1920702..1921574 | + | 873 | WP_181479177.1 | copper homeostasis membrane protein CopD | - |
| HV246_RS08955 | 1921587..1921928 | + | 342 | WP_000976465.1 | YebY family protein | - |
| - | 1921958..1922203 | - | 246 | - | - | Antitoxin |
| - | 1922086..1922189 | + | 104 | - | - | Toxin |
| HV246_RS08960 | 1922338..1922994 | + | 657 | WP_000806226.1 | protein-serine/threonine phosphatase | - |
| HV246_RS08965 | 1922995..1923186 | - | 192 | WP_001516263.1 | YebW family protein | - |
| HV246_RS08970 | 1923291..1923527 | - | 237 | WP_001516264.1 | DUF1480 family protein | - |
| HV246_RS08975 | 1923643..1925082 | - | 1440 | WP_181479178.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1879117..1938094 | 58977 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163909 NZ_CP056697:1922086-1922189 [Escherichia marmotae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 246 bp
>AT163909 NZ_CP056697:c1922203-1921958 [Escherichia marmotae]
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCGTTCTGGTGAAAGCACCCGGGCGG
TTTTTT
CTGGCTTTATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCG
TAAAGTGGTCAGAAAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCGTTCTGGTGAAAGCACCCGGGCGG
TTTTTT
