Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2003939..2004140 | Replicon | chromosome |
| Accession | NZ_CP056676 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00642 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2004032..2004135 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2003939..2004140 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV254_RS09530 | 2000488..2001150 | - | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
| HV254_RS09535 | 2001175..2001813 | - | 639 | WP_045623249.1 | carbon-nitrogen hydrolase family protein | - |
| HV254_RS09540 | 2001925..2002155 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV254_RS09545 | 2002293..2002664 | + | 372 | WP_023300433.1 | CopC domain-containing protein YobA | - |
| HV254_RS09550 | 2002666..2003535 | + | 870 | WP_045623248.1 | copper homeostasis membrane protein CopD | - |
| HV254_RS09555 | 2003552..2003890 | + | 339 | WP_022648464.1 | YebY family protein | - |
| - | 2003939..2004140 | - | 202 | - | - | Antitoxin |
| HV254_RS09560 | 2004016..2004213 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2004032..2004135 | + | 104 | - | - | Toxin |
| HV254_RS09565 | 2004259..2005239 | - | 981 | WP_045623245.1 | VirK/YbjX family protein | - |
| HV254_RS09570 | 2005407..2006051 | + | 645 | WP_038416258.1 | protein-serine/threonine phosphatase | - |
| HV254_RS09575 | 2006086..2006325 | - | 240 | WP_006811010.1 | YebV family protein | - |
| HV254_RS09580 | 2006430..2007893 | - | 1464 | WP_045623244.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163854 NZ_CP056676:2004032-2004135 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT163854 NZ_CP056676:c2004140-2003939 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
