Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2133359..2133502 | Replicon | chromosome |
| Accession | NZ_CP056573 | ||
| Organism | Citrobacter freundii strain RHBSTW-00370 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2133394..2133497 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2133359..2133502 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV178_RS10185 | 2129806..2130468 | - | 663 | WP_003841659.1 | exodeoxyribonuclease X | - |
| HV178_RS10190 | 2130492..2131148 | - | 657 | WP_046671220.1 | carbon-nitrogen hydrolase family protein | - |
| HV178_RS10195 | 2131255..2131485 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| HV178_RS10200 | 2131629..2132003 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| HV178_RS10205 | 2132007..2132879 | + | 873 | WP_048232225.1 | copper homeostasis membrane protein CopD | - |
| HV178_RS10210 | 2132900..2133238 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2133359..2133502 | - | 144 | - | - | Antitoxin |
| - | 2133394..2133497 | + | 104 | - | - | Toxin |
| HV178_RS10215 | 2133651..2134292 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| HV178_RS10220 | 2134293..2134484 | - | 192 | WP_003841978.1 | YebW family protein | - |
| HV178_RS10225 | 2134587..2134823 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| HV178_RS10230 | 2134924..2136345 | - | 1422 | WP_071698462.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2097997..2149270 | 51273 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T163706 NZ_CP056573:2133394-2133497 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT163706 NZ_CP056573:c2133502-2133359 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
