Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1889424..1889569 | Replicon | chromosome |
| Accession | NZ_CP056168 | ||
| Organism | Enterobacter roggenkampii strain RHBSTW-00695 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1889459..1889562 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1889424..1889569 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV268_RS09135 | 1885907..1886569 | - | 663 | WP_069598486.1 | exodeoxyribonuclease X | - |
| HV268_RS09140 | 1886594..1887244 | - | 651 | WP_032675034.1 | carbon-nitrogen hydrolase family protein | - |
| HV268_RS09145 | 1887355..1887585 | - | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| HV268_RS09150 | 1887723..1888094 | + | 372 | WP_069598484.1 | CopC domain-containing protein YobA | - |
| HV268_RS09155 | 1888096..1888965 | + | 870 | WP_181531373.1 | copper homeostasis membrane protein CopD | - |
| HV268_RS09160 | 1888982..1889320 | + | 339 | WP_008500468.1 | YebY family protein | - |
| - | 1889424..1889569 | - | 146 | - | - | Antitoxin |
| - | 1889459..1889562 | + | 104 | - | - | Toxin |
| HV268_RS09165 | 1889974..1890465 | + | 492 | WP_023293949.1 | hypothetical protein | - |
| HV268_RS09170 | 1890772..1891713 | - | 942 | WP_069598482.1 | VirK/YbjX family protein | - |
| HV268_RS09175 | 1891880..1892524 | + | 645 | WP_095442391.1 | protein-serine/threonine phosphatase | - |
| HV268_RS09180 | 1892559..1892798 | - | 240 | WP_008500472.1 | YebV family protein | - |
| HV268_RS09185 | 1892905..1894347 | - | 1443 | WP_123922252.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162876 NZ_CP056168:1889459-1889562 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT162876 NZ_CP056168:c1889569-1889424 [Enterobacter roggenkampii]
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
