Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2428996..2429197 | Replicon | chromosome |
| Accession | NZ_CP056155 | ||
| Organism | Enterobacter hormaechei strain RHBSTW-00844 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2429001..2429104 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2428996..2429197 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV295_RS11665 | 2425241..2426704 | + | 1464 | WP_047051762.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV295_RS11670 | 2426811..2427050 | + | 240 | WP_006811010.1 | YebV family protein | - |
| HV295_RS11675 | 2427085..2427729 | - | 645 | WP_047051763.1 | protein-serine/threonine phosphatase | - |
| HV295_RS11680 | 2427897..2428877 | + | 981 | WP_047051764.1 | VirK/YbjX family protein | - |
| HV295_RS11685 | 2428923..2429120 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2428996..2429197 | + | 202 | - | - | Antitoxin |
| - | 2429001..2429104 | - | 104 | - | - | Toxin |
| HV295_RS11690 | 2429245..2429583 | - | 339 | WP_003859787.1 | YebY family protein | - |
| HV295_RS11695 | 2429600..2430469 | - | 870 | WP_048982486.1 | copper homeostasis membrane protein CopD | - |
| HV295_RS11700 | 2430471..2430842 | - | 372 | WP_047051768.1 | CopC domain-containing protein YobA | - |
| HV295_RS11705 | 2430980..2431210 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| HV295_RS11710 | 2431322..2431972 | + | 651 | WP_048982489.1 | carbon-nitrogen hydrolase family protein | - |
| HV295_RS11715 | 2431997..2432659 | + | 663 | WP_047051600.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2419886..2495674 | 75788 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162803 NZ_CP056155:c2429104-2429001 [Enterobacter hormaechei]
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT162803 NZ_CP056155:2428996-2429197 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
