Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1916084..1916227 | Replicon | chromosome |
| Accession | NZ_CP056129 | ||
| Organism | Enterobacter roggenkampii strain RHBSTW-00925 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1916119..1916222 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1916084..1916227 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV328_RS09150 | 1912567..1913229 | - | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
| HV328_RS09155 | 1913254..1913904 | - | 651 | WP_032675034.1 | carbon-nitrogen hydrolase family protein | - |
| HV328_RS09160 | 1914015..1914245 | - | 231 | WP_047747386.1 | DNA polymerase III subunit theta | - |
| HV328_RS09165 | 1914383..1914754 | + | 372 | WP_047747387.1 | CopC domain-containing protein YobA | - |
| HV328_RS09170 | 1914756..1915625 | + | 870 | WP_047747388.1 | copper homeostasis membrane protein CopD | - |
| HV328_RS09175 | 1915642..1915980 | + | 339 | WP_008500468.1 | YebY family protein | - |
| - | 1916084..1916227 | - | 144 | - | - | Antitoxin |
| - | 1916119..1916222 | + | 104 | - | - | Toxin |
| HV328_RS09180 | 1916386..1917327 | - | 942 | WP_047747389.1 | VirK/YbjX family protein | - |
| HV328_RS09185 | 1917504..1918148 | + | 645 | WP_047747390.1 | protein-serine/threonine phosphatase | - |
| HV328_RS09190 | 1918183..1918422 | - | 240 | WP_008500472.1 | YebV family protein | - |
| HV328_RS09195 | 1918528..1919970 | - | 1443 | WP_047747391.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162700 NZ_CP056129:1916119-1916222 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT162700 NZ_CP056129:c1916227-1916084 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
