Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2641858..2642003 | Replicon | chromosome |
| Accession | NZ_CP056126 | ||
| Organism | Enterobacter asburiae strain RHBSTW-01009 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2641865..2641968 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2641858..2642003 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV349_RS12975 | 2637021..2638463 | + | 1443 | WP_181599379.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HV349_RS12980 | 2638570..2638809 | + | 240 | WP_008500472.1 | YebV family protein | - |
| HV349_RS12985 | 2638844..2639488 | - | 645 | WP_033145837.1 | protein-serine/threonine phosphatase | - |
| HV349_RS12990 | 2639655..2640596 | + | 942 | WP_059346923.1 | VirK/YbjX family protein | - |
| HV349_RS12995 | 2640770..2641666 | + | 897 | WP_059346924.1 | benzoate transporter | - |
| - | 2641858..2642003 | + | 146 | - | - | Antitoxin |
| - | 2641865..2641968 | - | 104 | - | - | Toxin |
| HV349_RS13000 | 2642107..2642445 | - | 339 | WP_045404471.1 | YebY family protein | - |
| HV349_RS13005 | 2642462..2643331 | - | 870 | WP_181599380.1 | copper homeostasis membrane protein CopD | - |
| HV349_RS13010 | 2643333..2643704 | - | 372 | WP_054829619.1 | CopC domain-containing protein YobA | - |
| HV349_RS13015 | 2643841..2644071 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| HV349_RS13020 | 2644181..2644831 | + | 651 | WP_059346946.1 | carbon-nitrogen hydrolase family protein | - |
| HV349_RS13025 | 2644856..2645518 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162683 NZ_CP056126:c2641968-2641865 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT162683 NZ_CP056126:2641858-2642003 [Enterobacter asburiae]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
