Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3972537..3972808 | Replicon | chromosome |
| Accession | NZ_CP055292 | ||
| Organism | Shigella sonnei strain SE6-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3972667..3972770 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3972537..3972808 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUX90_RS18825 | 3969092..3969754 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUX90_RS18830 | 3969778..3970434 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| HUX90_RS18835 | 3970536..3970766 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUX90_RS18840 | 3970905..3971279 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HUX90_RS18845 | 3971283..3972155 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| HUX90_RS18850 | 3972168..3972509 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3972537..3972808 | - | 272 | - | - | Antitoxin |
| - | 3972667..3972770 | + | 104 | - | - | Toxin |
| HUX90_RS18855 | 3972905..3973561 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HUX90_RS18860 | 3973562..3973753 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HUX90_RS18865 | 3973858..3974094 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HUX90_RS18870 | 3974212..3975651 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T162250 NZ_CP055292:3972667-3972770 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT162250 NZ_CP055292:c3972808-3972537 [Shigella sonnei]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
