Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1880866..1881011 | Replicon | chromosome |
| Accession | NZ_CP055174 | ||
| Organism | Klebsiella pneumoniae strain STEFF_19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1880902..1881004 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1880866..1881011 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ47_RS09045 (HUZ47_09030) | 1875996..1878056 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HUZ47_RS09050 (HUZ47_09035) | 1878060..1878719 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HUZ47_RS09055 (HUZ47_09040) | 1878798..1879028 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HUZ47_RS09060 (HUZ47_09045) | 1879141..1879515 | + | 375 | WP_016529032.1 | CopC domain-containing protein YobA | - |
| HUZ47_RS09065 (HUZ47_09050) | 1879519..1880388 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| HUZ47_RS09070 (HUZ47_09055) | 1880405..1880743 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1880866..1881011 | - | 146 | - | - | Antitoxin |
| - | 1880902..1881004 | + | 103 | - | - | Toxin |
| HUZ47_RS09075 (HUZ47_09060) | 1881379..1881522 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HUZ47_RS09080 (HUZ47_09065) | 1881627..1882595 | - | 969 | WP_074421963.1 | VirK/YbjX family protein | - |
| HUZ47_RS09085 (HUZ47_09070) | 1882752..1883405 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| HUZ47_RS09090 (HUZ47_09075) | 1883402..1883593 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HUZ47_RS09095 (HUZ47_09080) | 1883691..1883930 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HUZ47_RS09100 (HUZ47_09085) | 1884046..1885479 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T161741 NZ_CP055174:1880902-1881004 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT161741 NZ_CP055174:c1881011-1880866 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
