Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2001610..2001881 | Replicon | chromosome |
| Accession | NZ_CP055099 | ||
| Organism | Shigella flexneri strain SWHIN_107 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2001740..2001843 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2001610..2001881 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ84_RS09530 | 1998165..1998827 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HUZ84_RS09535 | 1998851..1999507 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| HUZ84_RS09540 | 1999609..1999839 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HUZ84_RS09545 | 1999978..2000352 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| HUZ84_RS09550 | 2000356..2001228 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| HUZ84_RS09555 | 2001241..2001582 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2001610..2001881 | - | 272 | - | - | Antitoxin |
| - | 2001740..2001843 | + | 104 | - | - | Toxin |
| HUZ84_RS09560 | 2001978..2002634 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| HUZ84_RS09565 | 2002635..2002826 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HUZ84_RS09570 | 2002931..2003167 | - | 237 | WP_001295499.1 | YebV family protein | - |
| HUZ84_RS09575 | 2003285..2004724 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T161493 NZ_CP055099:2001740-2001843 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT161493 NZ_CP055099:c2001881-2001610 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
