Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1914818..1914963 | Replicon | chromosome |
| Accession | NZ_CP055003 | ||
| Organism | Klebsiella pneumoniae strain STIN_79 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1914854..1914956 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1914818..1914963 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ54_RS09365 (HUZ54_09360) | 1909948..1912008 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HUZ54_RS09370 (HUZ54_09365) | 1912012..1912671 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| HUZ54_RS09375 (HUZ54_09370) | 1912750..1912980 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HUZ54_RS09380 (HUZ54_09375) | 1913093..1913467 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HUZ54_RS09385 (HUZ54_09380) | 1913471..1914340 | + | 870 | WP_021440385.1 | copper homeostasis membrane protein CopD | - |
| HUZ54_RS09390 (HUZ54_09385) | 1914357..1914695 | + | 339 | WP_239619694.1 | YebY family protein | - |
| - | 1914818..1914963 | - | 146 | - | - | Antitoxin |
| - | 1914854..1914956 | + | 103 | - | - | Toxin |
| HUZ54_RS09395 (HUZ54_09390) | 1915332..1915475 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HUZ54_RS09400 (HUZ54_09395) | 1915580..1916548 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| HUZ54_RS09405 (HUZ54_09400) | 1916705..1917358 | + | 654 | WP_021440384.1 | protein-serine/threonine phosphatase | - |
| HUZ54_RS09410 (HUZ54_09405) | 1917355..1917546 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HUZ54_RS09415 (HUZ54_09410) | 1917644..1917883 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HUZ54_RS09420 (HUZ54_09415) | 1917999..1919432 | - | 1434 | WP_021440382.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T160918 NZ_CP055003:1914854-1914956 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT160918 NZ_CP055003:c1914963-1914818 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
