Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2176547..2176818 | Replicon | chromosome |
| Accession | NZ_CP054353 | ||
| Organism | Escherichia coli strain SCU-172 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2176677..2176780 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2176547..2176818 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPE50_RS10700 | 2173102..2173764 | - | 663 | WP_000944240.1 | exodeoxyribonuclease X | - |
| HPE50_RS10705 | 2173788..2174444 | - | 657 | WP_001571542.1 | carbon-nitrogen hydrolase family protein | - |
| HPE50_RS10710 | 2174546..2174776 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HPE50_RS10715 | 2174915..2175289 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| HPE50_RS10720 | 2175293..2176165 | + | 873 | WP_000879331.1 | copper homeostasis membrane protein CopD | - |
| HPE50_RS10725 | 2176178..2176519 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2176547..2176818 | - | 272 | - | - | Antitoxin |
| - | 2176677..2176780 | + | 104 | - | - | Toxin |
| HPE50_RS10730 | 2176915..2177571 | + | 657 | WP_001330268.1 | protein-serine/threonine phosphatase | - |
| HPE50_RS10735 | 2177572..2177763 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HPE50_RS10740 | 2177868..2178104 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HPE50_RS10745 | 2178222..2179661 | - | 1440 | WP_024233854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T159444 NZ_CP054353:2176677-2176780 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT159444 NZ_CP054353:c2176818-2176547 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
