Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2061542..2061682 | Replicon | chromosome |
| Accession | NZ_CP053925 | ||
| Organism | Serratia marcescens strain 12/2010 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2061586..2061682 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2061542..2061682 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HP475_RS09920 | 2056744..2057169 | + | 426 | WP_033653830.1 | RNA polymerase-binding protein DksA | - |
| HP475_RS09925 | 2057362..2058315 | + | 954 | WP_033646426.1 | prolyl aminopeptidase | - |
| HP475_RS09930 | 2058347..2058577 | - | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| HP475_RS09935 | 2058923..2059441 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| HP475_RS09940 | 2059766..2060149 | + | 384 | WP_004940886.1 | CopC domain-containing protein YobA | - |
| HP475_RS09945 | 2060152..2061033 | + | 882 | WP_049234570.1 | copper homeostasis membrane protein CopD | - |
| HP475_RS09950 | 2061103..2061444 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 2061542..2061682 | - | 141 | - | - | Antitoxin |
| - | 2061586..2061682 | + | 97 | - | - | Toxin |
| HP475_RS09955 | 2061728..2062816 | - | 1089 | WP_126178863.1 | tyrosine-type recombinase/integrase | - |
| HP475_RS09960 | 2062936..2063154 | - | 219 | WP_126178910.1 | ogr/Delta-like zinc finger family protein | - |
| HP475_RS09965 | 2063228..2064325 | - | 1098 | WP_126178864.1 | phage late control D family protein | - |
| HP475_RS09970 | 2064322..2064786 | - | 465 | WP_060429947.1 | phage tail protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2055652..2105582 | 49930 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T158290 NZ_CP053925:2061586-2061682 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT158290 NZ_CP053925:c2061682-2061542 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
