Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | PP_4151-4152/excise(antitoxin) |
| Location | 5080699..5081741 | Replicon | chromosome |
| Accession | NZ_CP053920 | ||
| Organism | Comamonas thiooxydans strain QYY | ||
Toxin (Protein)
| Gene name | PP_4152 | Uniprot ID | - |
| Locus tag | HQM26_RS23490 | Protein ID | WP_003153636.1 |
| Coordinates | 5081166..5081741 (+) | Length | 192 a.a. |
Antitoxin (Protein)
| Gene name | PP_4151 | Uniprot ID | I3TV68 |
| Locus tag | HQM26_RS23485 | Protein ID | WP_003050245.1 |
| Coordinates | 5080699..5081169 (+) | Length | 157 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HQM26_RS23450 | 5076087..5077505 | - | 1419 | WP_003821113.1 | TIGR03752 family integrating conjugative element protein | - |
| HQM26_RS23455 | 5077495..5078409 | - | 915 | WP_054441253.1 | TIGR03749 family integrating conjugative element protein | - |
| HQM26_RS23460 | 5078406..5079098 | - | 693 | WP_004350603.1 | TIGR03746 family integrating conjugative element protein | - |
| HQM26_RS23465 | 5079095..5079493 | - | 399 | WP_003153632.1 | TIGR03750 family conjugal transfer protein | - |
| HQM26_RS23470 | 5079506..5079865 | - | 360 | WP_003153634.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| HQM26_RS23475 | 5079882..5080115 | - | 234 | WP_003050225.1 | TIGR03758 family integrating conjugative element protein | - |
| HQM26_RS23480 | 5080112..5080495 | - | 384 | WP_003090167.1 | RAQPRD family integrative conjugative element protein | - |
| HQM26_RS23485 | 5080699..5081169 | + | 471 | WP_003050245.1 | helix-turn-helix domain-containing protein | Antitoxin |
| HQM26_RS23490 | 5081166..5081741 | + | 576 | WP_003153636.1 | PIN domain-containing protein | Toxin |
| HQM26_RS23495 | 5081759..5082673 | + | 915 | WP_003050256.1 | AAA family ATPase | - |
| HQM26_RS23500 | 5082670..5083140 | + | 471 | WP_003153638.1 | hypothetical protein | - |
| HQM26_RS23505 | 5083137..5083637 | + | 501 | WP_003090159.1 | hypothetical protein | - |
| HQM26_RS23510 | 5083637..5084539 | + | 903 | WP_003153640.1 | nucleotidyltransferase domain-containing protein | - |
| HQM26_RS23515 | 5084578..5085303 | + | 726 | WP_003050273.1 | CBASS effector endonuclease NucC | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 5052363..5108325 | 55962 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 192 a.a. Molecular weight: 21629.78 Da Isoelectric Point: 5.9995
>T158274 WP_003153636.1 NZ_CP053920:5081166-5081741 [Comamonas thiooxydans]
MRHSPFTAVYDACVLYPAPLRDFLMWLGLSGRFRARWSQAIHEEWKRNLLINRPDLTRVQVDRTSDLMDRAIPDGLVEGY
EALVAGLTLPDPNDRHVLAAAIRCGASVIVTFNERDFPNDLLAPYGIESQHPDEFVDNLLDLDAAAVVSAAQRQRAQLKH
PPIDVDRYLEILLRQGLVQTTKVLATYRTIL
MRHSPFTAVYDACVLYPAPLRDFLMWLGLSGRFRARWSQAIHEEWKRNLLINRPDLTRVQVDRTSDLMDRAIPDGLVEGY
EALVAGLTLPDPNDRHVLAAAIRCGASVIVTFNERDFPNDLLAPYGIESQHPDEFVDNLLDLDAAAVVSAAQRQRAQLKH
PPIDVDRYLEILLRQGLVQTTKVLATYRTIL
Download Length: 576 bp
>T158274 NZ_CP069603:c1259145-1258942 [Dickeya dianthicola]
ATGAAAAAAATCGACTATTTAATGCGTTTGCGTAAATGCACAACCATCGACACGCTTGAGCGTGTTATAGAAAAAAACAA
GTACGAGCTTTCCAACGATGAGCTTGAAATGTTCTATTCAGCTGCAGACCACCGCCTGGCAGAGCTGACGATGAATAAGC
TTTACGACAAAGTACCGACTGCTGTGTGGAAATACGTTCGTTAA
ATGAAAAAAATCGACTATTTAATGCGTTTGCGTAAATGCACAACCATCGACACGCTTGAGCGTGTTATAGAAAAAAACAA
GTACGAGCTTTCCAACGATGAGCTTGAAATGTTCTATTCAGCTGCAGACCACCGCCTGGCAGAGCTGACGATGAATAAGC
TTTACGACAAAGTACCGACTGCTGTGTGGAAATACGTTCGTTAA
Antitoxin
Download Length: 157 a.a. Molecular weight: 17245.62 Da Isoelectric Point: 6.3803
>AT158274 WP_003050245.1 NZ_CP053920:5080699-5081169 [Comamonas thiooxydans]
MTTATAQSKMTLPAAGEVKAAVQGQRALAAYLATQFETQHIQIFDDHKQAHQVELPTSALRLLVDILAELADGNAVKVVP
VHAELTTQEAADLLNVSRPHFVKLLEDGVLAFHRTGKHRRVRFADLMQYKEARERASEQAMAELAQQSQELGMGYE
MTTATAQSKMTLPAAGEVKAAVQGQRALAAYLATQFETQHIQIFDDHKQAHQVELPTSALRLLVDILAELADGNAVKVVP
VHAELTTQEAADLLNVSRPHFVKLLEDGVLAFHRTGKHRRVRFADLMQYKEARERASEQAMAELAQQSQELGMGYE
Download Length: 471 bp
>AT158274 NZ_CP069603:c1259567-1259199 [Dickeya dianthicola]
ATGGATGAGTACACACCTCAACATTATGATATTGCCCAACTCAGATTCTTGTGTGAAAATCTGCACGACGAAAGTATCGC
GACATTAGGTGATAGCAGTCGTAGCTGGGTGAATGACCCGACTTCTGCGGTCAACCTTCAACTAAACGAACTTATCGAGC
ATATTGCGGCATTTGTTGTTACCTACAAAATAAAATACCCGCATGAAGCTGCGTTATGTGAACGGGTTGAGAAATATCTG
GACGACACTTATATTCTTTTCAGTAACTACGGTATAAATGACGCCGAGTTGCAGAAATGGCGAAAATCCAAGTCACAATT
ATTCAGAATGTTCTCAGAAAAGAGCATCTGTACGGTAGTAAAAACTTAA
ATGGATGAGTACACACCTCAACATTATGATATTGCCCAACTCAGATTCTTGTGTGAAAATCTGCACGACGAAAGTATCGC
GACATTAGGTGATAGCAGTCGTAGCTGGGTGAATGACCCGACTTCTGCGGTCAACCTTCAACTAAACGAACTTATCGAGC
ATATTGCGGCATTTGTTGTTACCTACAAAATAAAATACCCGCATGAAGCTGCGTTATGTGAACGGGTTGAGAAATATCTG
GACGACACTTATATTCTTTTCAGTAACTACGGTATAAATGACGCCGAGTTGCAGAAATGGCGAAAATCCAAGTCACAATT
ATTCAGAATGTTCTCAGAAAAGAGCATCTGTACGGTAGTAAAAACTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|