Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-Phd |
| Location | 400769..401347 | Replicon | chromosome |
| Accession | NZ_CP053801 | ||
| Organism | Vibrio cholerae strain SO5Y | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | - |
| Locus tag | HPY15_RS15450 | Protein ID | WP_046126185.1 |
| Coordinates | 400769..401086 (-) | Length | 106 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | A0A366AI09 |
| Locus tag | HPY15_RS15455 | Protein ID | WP_000557291.1 |
| Coordinates | 401105..401347 (-) | Length | 81 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPY15_RS15405 | 396181..396438 | + | 258 | WP_000861987.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| HPY15_RS15410 | 396426..396728 | + | 303 | WP_046126188.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HPY15_RS15415 | 396904..397818 | + | 915 | WP_046126187.1 | hypothetical protein | - |
| HPY15_RS15420 | 397941..398240 | - | 300 | WP_000802136.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HPY15_RS15425 | 398237..398479 | - | 243 | WP_001107719.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| HPY15_RS15430 | 398847..399167 | + | 321 | Protein_404 | DUF645 family protein | - |
| HPY15_RS15435 | 399234..399572 | + | 339 | WP_046127316.1 | hypothetical protein | - |
| HPY15_RS15440 | 399738..400124 | + | 387 | WP_001015864.1 | NUDIX hydrolase | - |
| HPY15_RS15445 | 400349..400633 | + | 285 | WP_046126186.1 | HEAT repeat domain-containing protein | - |
| HPY15_RS15450 | 400769..401086 | - | 318 | WP_046126185.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| HPY15_RS15455 | 401105..401347 | - | 243 | WP_000557291.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| HPY15_RS15460 | 401739..401918 | + | 180 | WP_162484547.1 | DUF645 family protein | - |
| HPY15_RS15465 | 402278..402454 | + | 177 | Protein_411 | DUF645 family protein | - |
| HPY15_RS15470 | 402670..403047 | + | 378 | WP_046126182.1 | hypothetical protein | - |
| HPY15_RS15475 | 403192..403674 | + | 483 | WP_046126181.1 | GNAT family N-acetyltransferase | - |
| HPY15_RS15480 | 403857..404180 | + | 324 | WP_080341697.1 | DUF3709 domain-containing protein | - |
| HPY15_RS15485 | 404478..405218 | + | 741 | Protein_415 | PhzF family phenazine biosynthesis protein | - |
| HPY15_RS15490 | 405377..405790 | + | 414 | WP_000451552.1 | GNAT family N-acetyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 296008..431802 | 135794 | |
| - | inside | Integron | - | - | 382712..427017 | 44305 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 106 a.a. Molecular weight: 12154.94 Da Isoelectric Point: 9.5427
>T157910 WP_046126185.1 NZ_CP053801:c401086-400769 [Vibrio cholerae]
MQNKQYKLSQLAQEHLLKIKHYTIENFAEAQWQKYKSSLLSGFQTLADNPGLGKSCEDIYQNGFYFPVGKHMAYYTKEAD
FILIVAVLGQSQLPQKHLKHSRFVS
MQNKQYKLSQLAQEHLLKIKHYTIENFAEAQWQKYKSSLLSGFQTLADNPGLGKSCEDIYQNGFYFPVGKHMAYYTKEAD
FILIVAVLGQSQLPQKHLKHSRFVS
Download Length: 318 bp
>T157910 NZ_CP069507:3976-4266 [Acinetobacter pittii]
ATGACACTGACGATTAGGTACAAGAAACAATTTAAAAAAGATTTTAAACGGGTAAGCTCAAACCCAAAGCTTAAGAAAGG
ACTCTTAATTTTGAAGGATCTTATTGATGAGCATTTGGTAAAAACAGGGACTGTTCCAGATGAGTATTTACCTCATCCTT
TGATTGGTGAGTGGAAACCCCATATGGAATGCCATATTTTACCTGATTTATTATTAATTTGGGATGTGGATGAAGATAAT
AATGAGCTAATACTTGCTCGGATTGGATCTCATTCTGAACTTTTTGGATAA
ATGACACTGACGATTAGGTACAAGAAACAATTTAAAAAAGATTTTAAACGGGTAAGCTCAAACCCAAAGCTTAAGAAAGG
ACTCTTAATTTTGAAGGATCTTATTGATGAGCATTTGGTAAAAACAGGGACTGTTCCAGATGAGTATTTACCTCATCCTT
TGATTGGTGAGTGGAAACCCCATATGGAATGCCATATTTTACCTGATTTATTATTAATTTGGGATGTGGATGAAGATAAT
AATGAGCTAATACTTGCTCGGATTGGATCTCATTCTGAACTTTTTGGATAA
Antitoxin
Download Length: 81 a.a. Molecular weight: 8931.22 Da Isoelectric Point: 5.6630
>AT157910 WP_000557291.1 NZ_CP053801:c401347-401105 [Vibrio cholerae]
MHTLTANDAKRNFGELLLSAQREPVIISKNSKNTVVVMSIKDFEELEAMKLDYLKHCFESAQKDLDSGKTVDGAAFLNTL
MHTLTANDAKRNFGELLLSAQREPVIISKNSKNTVVVMSIKDFEELEAMKLDYLKHCFESAQKDLDSGKTVDGAAFLNTL
Download Length: 243 bp
>AT157910 NZ_CP069507:3717-3992 [Acinetobacter pittii]
ATGAATACTTTGGCAAAAAAAGATGAGTATGTACGTGCTAGGGTTCCAAATGAATTAAAGGTTCAAGCGGAGCGAATTCT
AAAAGAAGTGGGTTTAAATACTACAGATGCTATTCGCTTATTATTAACGCAAGTAGTAAATCGAGGTGGATTTCCTTTAG
AGTTAAGAACCCCTAACCGTACAACAATTGAGGCTATGAACTCTGTTGCAGAACCTAAAAAATTTAGTTCTGCTCAGGAA
TTGTTTACGGATTTAGAAGATGACACTGACGATTAG
ATGAATACTTTGGCAAAAAAAGATGAGTATGTACGTGCTAGGGTTCCAAATGAATTAAAGGTTCAAGCGGAGCGAATTCT
AAAAGAAGTGGGTTTAAATACTACAGATGCTATTCGCTTATTATTAACGCAAGTAGTAAATCGAGGTGGATTTCCTTTAG
AGTTAAGAACCCCTAACCGTACAACAATTGAGGCTATGAACTCTGTTGCAGAACCTAAAAAATTTAGTTCTGCTCAGGAA
TTGTTTACGGATTTAGAAGATGACACTGACGATTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|