Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1870301..1870572 | Replicon | chromosome |
| Accession | NZ_CP053600 | ||
| Organism | Escherichia coli strain Nico21(DE3) | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1870339..1870442 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1870301..1870572 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HO398_RS09285 | 1867458..1868897 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HO398_RS09290 | 1869015..1869251 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HO398_RS09295 | 1869356..1869547 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HO398_RS09300 | 1869548..1870204 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1870301..1870572 | + | 272 | - | - | Antitoxin |
| - | 1870339..1870442 | - | 104 | - | - | Toxin |
| HO398_RS09305 | 1870599..1870940 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HO398_RS09310 | 1870953..1871825 | - | 873 | WP_000879293.1 | copper homeostasis membrane protein CopD | - |
| HO398_RS09315 | 1871829..1872203 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HO398_RS09320 | 1872342..1872572 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HO398_RS09325 | 1872674..1873330 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein | - |
| HO398_RS09330 | 1873354..1874016 | + | 663 | WP_000944245.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T156983 NZ_CP053600:c1870442-1870339 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT156983 NZ_CP053600:1870301-1870572 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
