Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3830156..3830299 | Replicon | chromosome |
| Accession | NZ_CP053568 | ||
| Organism | Enterobacter cloacae strain MY490 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3830161..3830264 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3830156..3830299 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPB40_RS18490 (HPB40_18440) | 3825316..3825555 | + | 240 | WP_013096113.1 | YebV family protein | - |
| HPB40_RS18495 (HPB40_18445) | 3825589..3826233 | - | 645 | WP_013096112.1 | protein-serine/threonine phosphatase | - |
| HPB40_RS18500 (HPB40_18450) | 3826400..3827341 | + | 942 | WP_013096111.1 | VirK/YbjX family protein | - |
| HPB40_RS18505 (HPB40_18455) | 3828131..3828979 | + | 849 | WP_062934752.1 | benzoate transporter | - |
| - | 3830156..3830299 | + | 144 | - | - | Antitoxin |
| - | 3830161..3830264 | - | 104 | - | - | Toxin |
| HPB40_RS18510 (HPB40_18460) | 3830404..3830742 | - | 339 | WP_013096105.1 | YebY family protein | - |
| HPB40_RS18515 (HPB40_18465) | 3830759..3831628 | - | 870 | WP_013096104.1 | copper homeostasis membrane protein CopD | - |
| HPB40_RS18520 (HPB40_18470) | 3831630..3832001 | - | 372 | WP_013096103.1 | CopC domain-containing protein YobA | - |
| HPB40_RS18525 (HPB40_18475) | 3832139..3832369 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| HPB40_RS18530 (HPB40_18480) | 3832479..3833129 | + | 651 | WP_013096101.1 | carbon-nitrogen hydrolase family protein | - |
| HPB40_RS18535 (HPB40_18485) | 3833153..3833815 | + | 663 | WP_013096100.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3809980..3895550 | 85570 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T156844 NZ_CP053568:c3830264-3830161 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT156844 NZ_CP053568:3830156-3830299 [Enterobacter cloacae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
