Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2152961..2153232 | Replicon | chromosome |
| Accession | NZ_CP053281 | ||
| Organism | Escherichia coli strain SCU-308 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2153091..2153194 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2152961..2153232 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ45_RS10480 | 2149516..2150178 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HHJ45_RS10485 | 2150202..2150858 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ45_RS10490 | 2150960..2151190 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ45_RS10495 | 2151329..2151703 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HHJ45_RS10500 | 2151707..2152579 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| HHJ45_RS10505 | 2152592..2152933 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2152961..2153232 | - | 272 | - | - | Antitoxin |
| - | 2153091..2153194 | + | 104 | - | - | Toxin |
| HHJ45_RS10510 | 2153329..2153985 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HHJ45_RS10515 | 2153986..2154177 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HHJ45_RS10520 | 2154282..2154518 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ45_RS10525 | 2154636..2156075 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T156499 NZ_CP053281:2153091-2153194 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT156499 NZ_CP053281:c2153232-2152961 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
