Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 803669..804504 | Replicon | chromosome |
| Accession | NZ_CP053281 | ||
| Organism | Escherichia coli strain SCU-308 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | HHJ45_RS03930 | Protein ID | WP_042966375.1 |
| Coordinates | 803669..804046 (-) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | A0A7W3AJG7 |
| Locus tag | HHJ45_RS03935 | Protein ID | WP_001389198.1 |
| Coordinates | 804136..804504 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ45_RS03895 | 798748..799353 | + | 606 | WP_001255030.1 | type II secretion system minor pseudopilin GspJ | - |
| HHJ45_RS03900 | 799350..800327 | + | 978 | WP_000633239.1 | type II secretion system minor pseudopilin GspK | - |
| HHJ45_RS03905 | 800324..801502 | + | 1179 | WP_000094989.1 | type II secretion system protein GspL | - |
| HHJ45_RS03910 | 801504..802040 | + | 537 | WP_000942795.1 | GspM family type II secretion system protein YghD | - |
| HHJ45_RS03915 | 802323..803165 | - | 843 | Protein_768 | DUF4942 domain-containing protein | - |
| HHJ45_RS03920 | 803250..803447 | - | 198 | WP_085949090.1 | DUF957 domain-containing protein | - |
| HHJ45_RS03925 | 803475..803672 | - | 198 | Protein_770 | hypothetical protein | - |
| HHJ45_RS03930 | 803669..804046 | - | 378 | WP_042966375.1 | TA system toxin CbtA family protein | Toxin |
| HHJ45_RS03935 | 804136..804504 | - | 369 | WP_001389198.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| HHJ45_RS03940 | 804584..804805 | - | 222 | WP_001405861.1 | DUF987 domain-containing protein | - |
| HHJ45_RS03945 | 804874..805350 | - | 477 | WP_001186724.1 | RadC family protein | - |
| HHJ45_RS03950 | 805366..805851 | - | 486 | WP_032270302.1 | antirestriction protein | - |
| HHJ45_RS03955 | 805943..806761 | - | 819 | WP_042970615.1 | DUF945 domain-containing protein | - |
| HHJ45_RS03960 | 806851..807084 | - | 234 | WP_001278282.1 | DUF905 family protein | - |
| HHJ45_RS03965 | 807090..807767 | - | 678 | WP_001097567.1 | hypothetical protein | - |
| HHJ45_RS03970 | 807918..808598 | - | 681 | WP_001282912.1 | WYL domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | gspC / gspD / gspE / gspF / gspG / gspH / gspI / gspJ / gspK / gspL / gspM | 718465..850626 | 132161 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14074.15 Da Isoelectric Point: 8.2904
>T156493 WP_042966375.1 NZ_CP053281:c804046-803669 [Escherichia coli]
MKTLPDTHVREASRCPSPVTIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDLPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPGAKQ
MKTLPDTHVREASRCPSPVTIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDLPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPGAKQ
Download Length: 378 bp
>T156493 NZ_CP069066:c695361-694948 [Mycobacterium tuberculosis]
GTGAAACCGCCGCTGGCAGTGGACACCAGCGTCGCGATTCCGTTGCTGGTACGGACCCATACCGCGCATGCGGCGGTTGT
CGCCTGGTGGGCACATCGGGAGGCCGCGCTGTGCGGGCACGCCCTGGCCGAAACCTACTCCGTGCTGACCCGCCTGCCGC
GTGACCTACGACTGGCACCGATGGACGCCGCGCGGCTTCTTACCGAACGCTTTGCGGCACCGCTGTTGTTGAGTTCCCGC
ACCACTGAACATCTCCCACGCGTGCTGGCCCAATTCGAGATCACTGGTGGCGCGGTCTATGACGCTCTCGTGGCCCTTGC
CGCCGCCGAGCACCGGGCTGAACTCGCCACACGCGATGCTCGAGCCAAGGACACTTACGAAAAGATCGGCGTCCACGTCG
TTGTCGCCGCGTGA
GTGAAACCGCCGCTGGCAGTGGACACCAGCGTCGCGATTCCGTTGCTGGTACGGACCCATACCGCGCATGCGGCGGTTGT
CGCCTGGTGGGCACATCGGGAGGCCGCGCTGTGCGGGCACGCCCTGGCCGAAACCTACTCCGTGCTGACCCGCCTGCCGC
GTGACCTACGACTGGCACCGATGGACGCCGCGCGGCTTCTTACCGAACGCTTTGCGGCACCGCTGTTGTTGAGTTCCCGC
ACCACTGAACATCTCCCACGCGTGCTGGCCCAATTCGAGATCACTGGTGGCGCGGTCTATGACGCTCTCGTGGCCCTTGC
CGCCGCCGAGCACCGGGCTGAACTCGCCACACGCGATGCTCGAGCCAAGGACACTTACGAAAAGATCGGCGTCCACGTCG
TTGTCGCCGCGTGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13610.39 Da Isoelectric Point: 6.3159
>AT156493 WP_001389198.1 NZ_CP053281:c804504-804136 [Escherichia coli]
VSDTLPGTTHPDDNNDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYMAVYPTPETKK
VSDTLPGTTHPDDNNDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYMAVYPTPETKK
Download Length: 369 bp
>AT156493 NZ_CP069066:c695594-695358 [Mycobacterium tuberculosis]
ATGAAGGCTGTTGTGGATGCGGCTGGCCGCATCGTCGTACCCAAACCGCTGCGCGAAGCCTTGGGGCTGCAACCGGGGTC
CACCGTGGAAATATCCCGCTATGGCGCTGGTCTCCACCTGATTCCCACCGGACGAACAGCGCGTCTCGAAGAGGAGAATG
GCGTACTGGTGGCCACCGGTGAGACCACGATCGACGATGAGGTCGTGTTCGGCCTTATCGATAGCGGCCGGAAGTGA
ATGAAGGCTGTTGTGGATGCGGCTGGCCGCATCGTCGTACCCAAACCGCTGCGCGAAGCCTTGGGGCTGCAACCGGGGTC
CACCGTGGAAATATCCCGCTATGGCGCTGGTCTCCACCTGATTCCCACCGGACGAACAGCGCGTCTCGAAGAGGAGAATG
GCGTACTGGTGGCCACCGGTGAGACCACGATCGACGATGAGGTCGTGTTCGGCCTTATCGATAGCGGCCGGAAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|