Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 285011..285282 | Replicon | chromosome |
| Accession | NZ_CP053258 | ||
| Organism | Escherichia coli strain GF4-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 285141..285244 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 285011..285282 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HLY11_RS01440 | 281566..282228 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HLY11_RS01445 | 282252..282908 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| HLY11_RS01450 | 283010..283240 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HLY11_RS01455 | 283379..283753 | + | 375 | WP_027662350.1 | CopC domain-containing protein YobA | - |
| HLY11_RS01460 | 283757..284629 | + | 873 | WP_171459277.1 | copper homeostasis membrane protein CopD | - |
| HLY11_RS01465 | 284642..284983 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 285011..285282 | - | 272 | - | - | Antitoxin |
| - | 285141..285244 | + | 104 | - | - | Toxin |
| HLY11_RS01470 | 285379..286035 | + | 657 | WP_171459278.1 | protein-serine/threonine phosphatase | - |
| HLY11_RS01475 | 286036..286227 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HLY11_RS01480 | 286332..286568 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HLY11_RS01485 | 286686..288125 | - | 1440 | WP_171459279.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T156445 NZ_CP053258:285141-285244 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT156445 NZ_CP053258:c285282-285011 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAATGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAATGAACTGAGGCGGTTTTTTTAT
