Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2160481..2160752 | Replicon | chromosome |
| Accession | NZ_CP051751 | ||
| Organism | Escherichia coli strain SCU-301 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2160611..2160714 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2160481..2160752 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ43_RS10115 | 2157036..2157698 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HHJ43_RS10120 | 2157722..2158378 | - | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ43_RS10125 | 2158480..2158710 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ43_RS10130 | 2158849..2159223 | + | 375 | WP_000168745.1 | CopC domain-containing protein YobA | - |
| HHJ43_RS10135 | 2159227..2160099 | + | 873 | WP_096986683.1 | copper homeostasis membrane protein CopD | - |
| HHJ43_RS10140 | 2160112..2160453 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2160481..2160752 | - | 272 | - | - | Antitoxin |
| - | 2160611..2160714 | + | 104 | - | - | Toxin |
| HHJ43_RS10145 | 2160849..2161505 | + | 657 | WP_089583405.1 | protein-serine/threonine phosphatase | - |
| HHJ43_RS10150 | 2161506..2161697 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HHJ43_RS10155 | 2161802..2162038 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ43_RS10160 | 2162156..2163595 | - | 1440 | WP_024179479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T155257 NZ_CP051751:2160611-2160714 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT155257 NZ_CP051751:c2160752-2160481 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
