Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2173412..2173680 | Replicon | chromosome |
| Accession | NZ_CP051744 | ||
| Organism | Escherichia coli strain SCU-484 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2173540..2173642 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2173412..2173680 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ53_RS10050 | 2169966..2170628 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HHJ53_RS10055 | 2170651..2171307 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ53_RS10060 | 2171409..2171639 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ53_RS10065 | 2171778..2172152 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HHJ53_RS10070 | 2172156..2173028 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| HHJ53_RS10075 | 2173041..2173382 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2173412..2173680 | - | 269 | - | - | Antitoxin |
| - | 2173540..2173642 | + | 103 | - | - | Toxin |
| HHJ53_RS10080 | 2173777..2174433 | + | 657 | WP_000812742.1 | protein-serine/threonine phosphatase | - |
| HHJ53_RS10085 | 2174434..2174625 | - | 192 | WP_001317886.1 | YebW family protein | - |
| HHJ53_RS10090 | 2174730..2174966 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ53_RS10095 | 2175084..2176523 | - | 1440 | WP_169057865.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T155226 NZ_CP051744:2173540-2173642 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT155226 NZ_CP051744:c2173680-2173412 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCTAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCTAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
