Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2078683..2078951 | Replicon | chromosome |
| Accession | NZ_CP051727 | ||
| Organism | Escherichia coli strain SCU-111 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2078811..2078913 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2078683..2078951 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ28_RS09880 | 2075236..2075898 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HHJ28_RS09885 | 2075922..2076578 | - | 657 | WP_000011646.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ28_RS09890 | 2076680..2076910 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ28_RS09895 | 2077049..2077423 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HHJ28_RS09900 | 2077427..2078299 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| HHJ28_RS09905 | 2078312..2078653 | + | 342 | WP_001764586.1 | YebY family protein | - |
| - | 2078683..2078951 | - | 269 | - | - | Antitoxin |
| - | 2078811..2078913 | + | 103 | - | - | Toxin |
| HHJ28_RS09910 | 2079048..2079704 | + | 657 | WP_001357783.1 | protein-serine/threonine phosphatase | - |
| HHJ28_RS09915 | 2079705..2079896 | - | 192 | WP_001317886.1 | YebW family protein | - |
| HHJ28_RS09920 | 2080001..2080237 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ28_RS09925 | 2080355..2081794 | - | 1440 | WP_024210966.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T155085 NZ_CP051727:2078811-2078913 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT155085 NZ_CP051727:c2078951-2078683 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
