Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 584459..584727 | Replicon | chromosome |
| Accession | NZ_CP051719 | ||
| Organism | Escherichia coli strain SCU-116 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 584497..584599 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 584459..584727 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ31_RS03000 | 581616..583055 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HHJ31_RS03005 | 583173..583409 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ31_RS03010 | 583514..583705 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HHJ31_RS03015 | 583706..584362 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 584459..584727 | + | 269 | - | - | Antitoxin |
| - | 584497..584599 | - | 103 | - | - | Toxin |
| HHJ31_RS03020 | 584757..585098 | - | 342 | WP_000984819.1 | YebY family protein | - |
| HHJ31_RS03025 | 585111..585983 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| HHJ31_RS03030 | 585987..586361 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HHJ31_RS03035 | 586500..586730 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ31_RS03040 | 586832..587488 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ31_RS03045 | 587511..588173 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T155005 NZ_CP051719:c584599-584497 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT155005 NZ_CP051719:584459-584727 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
