Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2109014..2109282 | Replicon | chromosome |
| Accession | NZ_CP051706 | ||
| Organism | Escherichia coli strain SCU-124 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2109142..2109244 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2109014..2109282 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ37_RS10065 | 2105566..2106228 | - | 663 | WP_000944249.1 | exodeoxyribonuclease X | - |
| HHJ37_RS10070 | 2106252..2106908 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| HHJ37_RS10075 | 2107011..2107241 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HHJ37_RS10080 | 2107380..2107754 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| HHJ37_RS10085 | 2107758..2108630 | + | 873 | WP_001524825.1 | copper homeostasis membrane protein CopD | - |
| HHJ37_RS10090 | 2108643..2108984 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2109014..2109282 | - | 269 | - | - | Antitoxin |
| - | 2109142..2109244 | + | 103 | - | - | Toxin |
| HHJ37_RS10095 | 2109379..2110035 | + | 657 | WP_001524821.1 | protein-serine/threonine phosphatase | - |
| HHJ37_RS10100 | 2110036..2110227 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HHJ37_RS10105 | 2110332..2110568 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HHJ37_RS10110 | 2110685..2112124 | - | 1440 | WP_024186908.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T154898 NZ_CP051706:2109142-2109244 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT154898 NZ_CP051706:c2109282-2109014 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
