Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/COG4683-HTH_37 |
| Location | 66012..66669 | Replicon | plasmid p24350-1 |
| Accession | NZ_CP051387 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium strain CVM 24350 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | U3PDC3 |
| Locus tag | HFR97_RS23955 | Protein ID | WP_000270043.1 |
| Coordinates | 66319..66669 (-) | Length | 117 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | HFR97_RS23950 | Protein ID | WP_000124640.1 |
| Coordinates | 66012..66314 (-) | Length | 101 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HFR97_RS23905 | 61637..62065 | + | 429 | WP_000591074.1 | hypothetical protein | - |
| HFR97_RS23910 | 62122..62481 | + | 360 | WP_000422768.1 | hypothetical protein | - |
| HFR97_RS23915 | 62481..62927 | + | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| HFR97_RS23920 | 62924..63442 | + | 519 | WP_000210756.1 | nitrite reductase | - |
| HFR97_RS23925 | 63442..63672 | + | 231 | WP_000972663.1 | hypothetical protein | - |
| HFR97_RS23930 | 63659..64516 | + | 858 | WP_001167032.1 | hypothetical protein | - |
| HFR97_RS23935 | 64747..65274 | + | 528 | WP_001236377.1 | thermonuclease family protein | - |
| HFR97_RS23940 | 65332..65604 | + | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| HFR97_RS23945 | 65692..65985 | + | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| HFR97_RS23950 | 66012..66314 | - | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin |
| HFR97_RS23955 | 66319..66669 | - | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| HFR97_RS23960 | 66832..67380 | + | 549 | WP_001061574.1 | transcriptional regulator | - |
| HFR97_RS23965 | 67721..67915 | + | 195 | WP_000343597.1 | hypothetical protein | - |
| HFR97_RS23970 | 67926..68297 | + | 372 | WP_000516916.1 | hypothetical protein | - |
| HFR97_RS23975 | 68290..68760 | + | 471 | WP_001281821.1 | hypothetical protein | - |
| HFR97_RS23980 | 68775..69110 | - | 336 | WP_000683476.1 | hypothetical protein | - |
| HFR97_RS23985 | 69207..69695 | + | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| HFR97_RS23990 | 69698..70195 | + | 498 | WP_000062185.1 | hypothetical protein | - |
| HFR97_RS23995 | 70356..71060 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| HFR97_RS24000 | 71125..71304 | - | 180 | Protein_90 | helix-turn-helix transcriptional regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..131331 | 131331 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 117 a.a. Molecular weight: 17237.68 Da Isoelectric Point: 5.5500
>T154039 WP_000270043.1 NZ_CP051387:c66669-66319 [Salmonella enterica subsp. enterica serovar Typhimurium]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
Download Length: 351 bp
>T154039 NZ_CP067303:c3726263-3725949 [Escherichia coli]
ATGCACCTGATAACTCAAAAAGCATTGAAAGATGCTGCGGAAAAATACCCGCAACATAAAACGGAGTTGGTGGCTCTGGG
GAACACGATTGCTAAGGGATATTTCAAAAAACCTGAGTCATTAAAAGCAGTATTCCCATCTCTGGATAACTTCAAATATC
TGGATAAGCATTATGTTTTCAATGTTGGGGGCAATGAATTACGTGTTGTAGCAATGGTCTTTTTTGAATCGCAAAAGTGC
TACATACGTGAAGTTATGACGCATAAAGAATACGATTTCTTTACCGCTGTTCATCGTACTAAGGGGAAAAAATGA
ATGCACCTGATAACTCAAAAAGCATTGAAAGATGCTGCGGAAAAATACCCGCAACATAAAACGGAGTTGGTGGCTCTGGG
GAACACGATTGCTAAGGGATATTTCAAAAAACCTGAGTCATTAAAAGCAGTATTCCCATCTCTGGATAACTTCAAATATC
TGGATAAGCATTATGTTTTCAATGTTGGGGGCAATGAATTACGTGTTGTAGCAATGGTCTTTTTTGAATCGCAAAAGTGC
TACATACGTGAAGTTATGACGCATAAAGAATACGATTTCTTTACCGCTGTTCATCGTACTAAGGGGAAAAAATGA
Antitoxin
Download Length: 101 a.a. Molecular weight: 14882.85 Da Isoelectric Point: 5.5500
>AT154039 WP_000124640.1 NZ_CP051387:c66314-66012 [Salmonella enterica subsp. enterica serovar Typhimurium]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFF
Download Length: 303 bp
>AT154039 NZ_CP067303:c3725952-3725536 [Escherichia coli]
ATGATTGCGATTGCCGACATCTTGCAAGCAGGAGAAAAGCTAACTGCTGTGGCACCTTTTCTGGCGGGTATTCAGAACGA
GGAACAATACACCCAGGCGCTGGAACTGGTAGATCATCTGCTGCTCAACGATCCTGAAAACCCCTTGCTGGATCTGGTGT
GTGCCAAAATAACCGCGTGGGAAGAATCAGCGCCCGAATTTGCGGAATTTAATGCCATGGCTCAAGCCATGCCTGGCGGT
ATAGCCGTGATTCGTACCCTTATGGATCAATATGGTTTAACCCTTTCCGATCTGCCGGAAATTGGCAGTAAATCTATGGT
GTCACGCGTTTTGAGCGGGAAGAGGAAATTAACGCTGGAACACGCTAAAAAATTGGCAACGCGATTCGGCATTTCTCCCG
CCTTGTTTATTGATTAA
ATGATTGCGATTGCCGACATCTTGCAAGCAGGAGAAAAGCTAACTGCTGTGGCACCTTTTCTGGCGGGTATTCAGAACGA
GGAACAATACACCCAGGCGCTGGAACTGGTAGATCATCTGCTGCTCAACGATCCTGAAAACCCCTTGCTGGATCTGGTGT
GTGCCAAAATAACCGCGTGGGAAGAATCAGCGCCCGAATTTGCGGAATTTAATGCCATGGCTCAAGCCATGCCTGGCGGT
ATAGCCGTGATTCGTACCCTTATGGATCAATATGGTTTAACCCTTTCCGATCTGCCGGAAATTGGCAGTAAATCTATGGT
GTCACGCGTTTTGAGCGGGAAGAGGAAATTAACGCTGGAACACGCTAAAAAATTGGCAACGCGATTCGGCATTTCTCCCG
CCTTGTTTATTGATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|