Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1941594..1941737 | Replicon | chromosome |
| Accession | NZ_CP051368 | ||
| Organism | Salmonella enterica subsp. houtenae serovar 43:z4 strain CVM 24399 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1941632..1941735 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1941594..1941737 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HFS24_RS09195 | 1938019..1938717 | - | 699 | WP_000944275.1 | exodeoxyribonuclease X | - |
| HFS24_RS09200 | 1938741..1939397 | - | 657 | WP_000100265.1 | carbon-nitrogen hydrolase family protein | - |
| HFS24_RS09205 | 1939504..1939734 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| HFS24_RS09210 | 1939872..1940246 | + | 375 | WP_001664129.1 | CopC domain-containing protein YobA | - |
| HFS24_RS09215 | 1940247..1941122 | + | 876 | WP_002953395.1 | copper homeostasis membrane protein CopD | - |
| HFS24_RS09220 | 1941139..1941489 | + | 351 | WP_000746717.1 | YebY family protein | - |
| - | 1941594..1941737 | - | 144 | - | - | Antitoxin |
| - | 1941632..1941735 | + | 104 | - | - | Toxin |
| HFS24_RS09225 | 1941856..1942251 | - | 396 | Protein_1816 | tyrosine-type recombinase/integrase | - |
| HFS24_RS23345 | 1942526..1943242 | + | 717 | WP_258169247.1 | DUF1076 domain-containing protein | - |
| HFS24_RS09235 | 1943401..1943685 | - | 285 | WP_071624889.1 | HigA family addiction module antitoxin | - |
| HFS24_RS09240 | 1943685..1943963 | - | 279 | WP_000597305.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HFS24_RS09245 | 1944215..1944475 | + | 261 | WP_219827419.1 | hypothetical protein | - |
| HFS24_RS09250 | 1944546..1945229 | - | 684 | WP_219827315.1 | PipA/GogA/GtgA family type III secretion system effector | - |
| HFS24_RS09255 | 1945654..1946484 | + | 831 | WP_258169248.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1919752..1946921 | 27169 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T154015 NZ_CP051368:1941632-1941735 [Salmonella enterica subsp. houtenae serovar 43:z4]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT154015 NZ_CP051368:c1941737-1941594 [Salmonella enterica subsp. houtenae serovar 43:z4]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
