Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 3139309..3139909 Replicon chromosome
Accession NZ_CP051206
Organism Dolichospermum flos-aquae CCAP 1403/13F

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag HGD76_RS15165 Protein ID WP_148760782.1
Coordinates 3139309..3139662 (-) Length 118 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag HGD76_RS15170 Protein ID WP_148760784.1
Coordinates 3139655..3139909 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HGD76_RS15145 3135193..3136485 - 1293 WP_168696277.1 ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit N -
HGD76_RS15150 3136829..3137884 - 1056 WP_168696278.1 tRNA 2-thiouridine(34) synthase MnmA -
HGD76_RS15155 3138096..3138641 + 546 WP_168696279.1 photosystem II reaction center PsbP family protein -
HGD76_RS15160 3138712..3139305 + 594 WP_148760781.1 septum formation inhibitor Maf -
HGD76_RS15165 3139309..3139662 - 354 WP_148760782.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
HGD76_RS15170 3139655..3139909 - 255 WP_148760784.1 hypothetical protein Antitoxin
HGD76_RS15175 3140188..3140952 + 765 WP_148760786.1 phycocyanobilin:ferredoxin oxidoreductase -
HGD76_RS15180 3141473..3142891 + 1419 WP_148760787.1 biotin/lipoyl-binding protein -
HGD76_RS15185 3142960..3144114 + 1155 WP_148760790.1 ABC transporter permease DevC -
HGD76_RS15190 3144130..3144291 + 162 WP_168696280.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- flank IS/Tn - - 3133794..3135008 1214


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-2

(31-107)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 118 a.a.        Molecular weight: 13465.51 Da        Isoelectric Point: 7.9624

>T153798 WP_148760782.1 NZ_CP051206:c3139662-3139309 [Dolichospermum flos-aquae CCAP 1403/13F]
MSDIPFIQVEVTLRFQRNLRKLAKKYLKIHNDIQPVIEQLQQGERLGDCIPKIGYEVFKLRVKNSDTQKGKSGGYRLIYY
VKTATAIILLTIYAKSEQADIAPDDIQSIISEYESED

Download         Length: 354 bp

>T153798 NZ_CP067100:c6886714-6885842 [Bradyrhizobium diazoefficiens]
ATGCGTAAGCCGCTGAAGAACGTCGGCGCTTCCGTCCGCGCCCGCCTCCTCAACCTTTCGAAAGAACGCAACGAGCCATA
CGACCTTCTGCTTACGCAATACGCGCTTGAAAGGTTGCTGTACCGGCTCAGCATCAGCAAGTACAAGGAACAGTTTGCAC
TCAAAGGTGCGATGTTGCTGCGCTACTGGCTCCATGATCCGCATCGGCCAACCCGCGATCTCGACCTGCTCGGCTTCGGC
GAGAGTGACCCACAGCTGACGCGTGGCTTCTTCAAGGAAATTTGTGAAGCTCAGGCTGTCGACGGCGTGACGTTCGATAC
CGGCAGCCTTGAAGTCGATAGGGTCCGCGATGAGTCAGGCTATGGCGGGCTGCGCCTCAAATGCTACGCGACGATCGACG
GGGCTCGTTTGCGCATCGTTATAGATATCGGCTATGGCGACGCTACCGAACCTGGACTGAATGAGATCGAACTGCTGACA
CTGCTCGATCAGCCAGCCCCGAAGCTGCGCGCCTATCCACCCGAAACCGTCATCGCCGAGAAGTTTCAAGCAATGGTGCA
TCTCGGGTTGGCAAATACGCGCCTGAAGGATTTCTACGATATCTGGGTGCTGACCCGAACCTATGAATTTAAGGACGACC
GGCTTTCACGCGCAATCAAAGCGACCTTCACGCGACGCAAGACCAACATCCCCGAAGACCGGCCGGATGCTCTCACGAAG
GCTTTCACCGACGACGCGACCAAGGTTCAGCAATGGAACGCGTTCGTTCAGGACGTCGCTATCGATCCTGGACCGCTTGC
CGATGTTGTCACCACGCTTGGCACTTTCCTGATGCCGCATGCAGAAAAGGCGCGGAAGTTGAAGGACAATTGA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9548.87 Da        Isoelectric Point: 4.4258

>AT153798 WP_148760784.1 NZ_CP051206:c3139909-3139655 [Dolichospermum flos-aquae CCAP 1403/13F]
MKAIKVMATVNQQGSLSLDKPLNIIQNSRVEVIILIPEAVEINEDHEQISSKEEIIQDFRQSWHEAMTGHTIPVSQLWEG
IENV

Download         Length: 255 bp

>AT153798 NZ_CP067100:c6887348-6886707 [Bradyrhizobium diazoefficiens]
ATGGAACCGCAACGCCAGGAGGATAGAGCGACTTCGCTTCTCCGGGCGCGAGGCATGATGCGCCTTTCCGAATTCCTCAA
CGAAGGTATCACGGCAGCAACCATTTCCCGGATGGAGCGAAAGGGTGCACTCAATCAACTTGCTCGCGGCCTCTACCAAC
TTCCTGACGCGCTCCTGGACGGCAATCACACGCTCGCCGTTGCCGCGAAACTCGTTCCTATTGGAGTCGTTTGTTATGAC
TCTGCACTCGCCTTTCATGAACTGACAGACCGTATCCCGCGCTCTGTTTGGATGGCGATCCGCCCGCGCGATTGGCGGCC
CAAGATTACACGTCCCCGTATTGAAATCGTGCGCTTCGGTCCTAAGGAGTTCGACAGGGGCGTTGAGCATCACACCATCG
AAGGTGTCTCAGTGCCTATCTACACCCCGGCAAAAACCATCGTCGATCTATTCAAGAGCGGCCAGCGCCAAAAGGCGTTC
TATAACACACCCGCAGGCATCACGCATGCCACGCAAGCGATGAAAGACGCTCTTCGACTGCACAAGGCGACGCCTTCCGA
AATCGCAAAATACGCCGTCGATGCGGGCATATGGCAAAAACTCGTTCAACCGCGTCTTGAGACACTCACAATCGATGCGT
AA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References