Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 1228681..1229513 | Replicon | chromosome |
| Accession | NZ_CP049979 | ||
| Organism | Escherichia coli strain IBS28 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | S1PD64 |
| Locus tag | HAP53_RS05790 | Protein ID | WP_000854753.1 |
| Coordinates | 1228681..1229055 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | HAP53_RS05795 | Protein ID | WP_024178267.1 |
| Coordinates | 1229145..1229513 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HAP53_RS05755 | 1223967..1225145 | + | 1179 | WP_000094989.1 | type II secretion system protein GspL | - |
| HAP53_RS05760 | 1225147..1225683 | + | 537 | WP_000942795.1 | GspM family type II secretion system protein YghD | - |
| HAP53_RS05765 | 1225964..1226245 | - | 282 | Protein_1107 | DUF4942 domain-containing protein | - |
| HAP53_RS05770 | 1226527..1227531 | - | 1005 | WP_001179707.1 | IS110-like element ISSfl8 family transposase | - |
| HAP53_RS05775 | 1227603..1227890 | - | 288 | Protein_1109 | DUF4942 domain-containing protein | - |
| HAP53_RS05780 | 1227987..1228184 | - | 198 | WP_000839281.1 | DUF957 domain-containing protein | - |
| HAP53_RS05785 | 1228196..1228684 | - | 489 | WP_000777553.1 | hypothetical protein | - |
| HAP53_RS05790 | 1228681..1229055 | - | 375 | WP_000854753.1 | TA system toxin CbtA family protein | Toxin |
| HAP53_RS05795 | 1229145..1229513 | - | 369 | WP_024178267.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| HAP53_RS05800 | 1229676..1229897 | - | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| HAP53_RS05805 | 1229960..1230436 | - | 477 | WP_001186727.1 | RadC family protein | - |
| HAP53_RS05810 | 1230452..1230937 | - | 486 | WP_000849582.1 | antirestriction protein | - |
| HAP53_RS05815 | 1230992..1231810 | - | 819 | WP_001234620.1 | DUF945 domain-containing protein | - |
| HAP53_RS05820 | 1231910..1232143 | - | 234 | WP_001119729.1 | DUF905 family protein | - |
| HAP53_RS05825 | 1232222..1232677 | - | 456 | WP_000581504.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 1226527..1242470 | 15943 | |
| - | flank | IS/Tn | - | - | 1226527..1227531 | 1004 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 14005.00 Da Isoelectric Point: 8.2905
>T151935 WP_000854753.1 NZ_CP049979:c1229055-1228681 [Escherichia coli]
MKTLPDTHVREASSCPSPVTIWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCPRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEKR
MKTLPDTHVREASSCPSPVTIWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCPRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEKR
Download Length: 375 bp
>T151935 NZ_CP065841:799701-800186 [Klebsiella quasipneumoniae]
ATGATCTCCGCTCCAGAACCGCTTCATACCGGGCATATTCTTACCCCGTTTTGTTGCGGCGTGGATTCTATGGATAACTG
GCTAAAACAGCGGGCGATGAAGAACCAGCTTTCTGGCGCATCCCGCACGTTCGTCTGCTGTGACGATGCGAAGGTAATGG
CGTACTACTCGCTGGCTTCAAGTGCTGTGACGACAAATACTGCGCCCGGTCGCTTCCGTCGCAATATGCCTGACCCGATC
CCGGTTGTGGTGCTGGGACGTCTGGCGGTGGATAAATCGCTGCATGGGAAAGGTGTCGGGCGGGCGCTGGTACGTGATGC
TGGGCTGCGTGTGATTCAGGTGGCGGAGACTATCGGCATTCGCGGGATGCTGGTTCACGCCCTGTCGGATGAAGCTCGAG
ATTTTTACCTGCGGGTGGGGTTTGAGCCGTCGCCTATAGATCCGATGATGCTGATGGTGACATTGGGGGATTTGGTTAAT
GCCTGA
ATGATCTCCGCTCCAGAACCGCTTCATACCGGGCATATTCTTACCCCGTTTTGTTGCGGCGTGGATTCTATGGATAACTG
GCTAAAACAGCGGGCGATGAAGAACCAGCTTTCTGGCGCATCCCGCACGTTCGTCTGCTGTGACGATGCGAAGGTAATGG
CGTACTACTCGCTGGCTTCAAGTGCTGTGACGACAAATACTGCGCCCGGTCGCTTCCGTCGCAATATGCCTGACCCGATC
CCGGTTGTGGTGCTGGGACGTCTGGCGGTGGATAAATCGCTGCATGGGAAAGGTGTCGGGCGGGCGCTGGTACGTGATGC
TGGGCTGCGTGTGATTCAGGTGGCGGAGACTATCGGCATTCGCGGGATGCTGGTTCACGCCCTGTCGGATGAAGCTCGAG
ATTTTTACCTGCGGGTGGGGTTTGAGCCGTCGCCTATAGATCCGATGATGCTGATGGTGACATTGGGGGATTTGGTTAAT
GCCTGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13552.41 Da Isoelectric Point: 7.0369
>AT151935 WP_024178267.1 NZ_CP049979:c1229513-1229145 [Escherichia coli]
VSDALSGITHPDDNHDRPWWGLPCTVRPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLGSGGYVYLAVYPTPETKK
VSDALSGITHPDDNHDRPWWGLPCTVRPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLGSGGYVYLAVYPTPETKK
Download Length: 369 bp
>AT151935 NZ_CP065841:799411-799704 [Klebsiella quasipneumoniae]
ATGCCAGCCGCAAACAGTATGACGATGAAACGCGAAACCTTGAACCTGCGCATCAAGCCCGCCGAGCGCGATCTTATTGA
TCGGGCGGCGAAAGCCAGAGGGAAAAACCGCACTGACTTTGTGCTGGAGGCCGCCCGAGCTGCCGCTGAGGAAGCGTTGA
TTGAGCAACGCATTATTTTGGCCGATCCGCAGGCTTATCAGGAATTTCTCGCTCGTCTGGATCAGGCTCCTGAGCCCAAT
GCCGCATTGCGTAAAACCATGCAGACCCCTGCACCGTGGGAGCAGGAAAAATGA
ATGCCAGCCGCAAACAGTATGACGATGAAACGCGAAACCTTGAACCTGCGCATCAAGCCCGCCGAGCGCGATCTTATTGA
TCGGGCGGCGAAAGCCAGAGGGAAAAACCGCACTGACTTTGTGCTGGAGGCCGCCCGAGCTGCCGCTGAGGAAGCGTTGA
TTGAGCAACGCATTATTTTGGCCGATCCGCAGGCTTATCAGGAATTTCTCGCTCGTCTGGATCAGGCTCCTGAGCCCAAT
GCCGCATTGCGTAAAACCATGCAGACCCCTGCACCGTGGGAGCAGGAAAAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|